Positive and Purifying Selection on the Drosophila Y Chromosome

Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

(2014) Daniel W. Bellott et al.   NATURE

Origins and functional evolution of Y chromosomes across mammals

(2014) Diego Cortez et al.   NATURE

Efficient identification of Y chromosome sequences in the human andDrosophilagenomes

(2013) Antonio Bernardo Carvalho et al.   GENOME RESEARCH

The Branch-Site Test of Positive Selection Is Surprisingly Robust but Lacks Power under Synonymous Substitution Saturation and Variation in GC

(2013) Walid H. Gharib et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reversal of an ancient sex chromosome to an autosome in Drosophila

(2013) Beatriz Vicoso et al.   NATURE

Strong Purifying Selection at Synonymous Sites in D. melanogaster

(2013) David S. Lawrie et al.   PLoS Genetics

Surprising Differences in the Variability of Y Chromosomes in African and Cosmopolitan Populations of Drosophila melanogaster

(2012) A. M. Larracuente et al.   GENETICS

Molecular Evolution in Nonrecombining Regions of the Drosophila melanogaster Genome

(2012) José L. Campos et al.   Genome Biology and Evolution

Patterns of Molecular Evolution of an Avian Neo-sex Chromosome

(2012) Irene Pala et al.   MOLECULAR BIOLOGY AND EVOLUTION

Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes

(2012) Jennifer F. Hughes et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Sex-Specific Adaptation Drives Early Sex Chromosome Evolution in Drosophila

(2012) Q. Zhou et al.   SCIENCE

High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes

(2011) P. Markova-Raina et al.   GENOME RESEARCH

What are the determinants of gene expression levels and breadths in the human genome?

(2011) Jungsun Park et al.   HUMAN MOLECULAR GENETICS

Expression breadth and expression abundance behave differently in correlations with evolutionary rates

(2010) Seung Park et al.   BMC EVOLUTIONARY BIOLOGY

Effective Population Size and the Efficacy of Selection on the X Chromosomes of Two Closely Related Drosophila Species

(2010) Peter Andolfatto et al.   Genome Biology and Evolution

Translocation of Y-Linked Genes to the Dot Chromosome in Drosophila pseudoobscura

(2010) Amanda M. Larracuente et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular Evolution of a Y Chromosome to Autosome Gene Duplication in Drosophila

(2010) K. A. Dyer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

(2010) Jennifer F. Hughes et al.   NATURE

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

Recombination Yet Inefficient Selection along the Drosophila melanogaster Subgroup's Fourth Chromosome

(2009) J. Roman Arguello et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origin and evolution of Y chromosomes: Drosophila tales

(2009) A. Bernardo Carvalho et al.   TRENDS IN GENETICS

Evidence for Degeneration of the Y Chromosome in the Dioecious Plant Silene latifolia

(2008) Gabriel A.B. Marais et al.   CURRENT BIOLOGY

Chromosomal Rearrangement Inferred From Comparisons of 12 Drosophila Genomes

(2008) A. Bhutkar et al.   GENETICS

Two New Y-Linked Genes in Drosophila melanogaster

(2008) M. D. Vibranovski et al.   GENETICS

The Temporal Dynamics of Processes Underlying Y Chromosome Degeneration

(2008) D. Bachtrog   GENETICS

Evidence for Male-Driven Evolution in Drosophila

(2008) D. Bachtrog   MOLECULAR BIOLOGY AND EVOLUTION

Low conservation of gene content in the Drosophila Y chromosome

(2008) Leonardo B. Koerich et al.   NATURE

Evolution of protein-coding genes in Drosophila

(2008) Amanda M. Larracuente et al.   TRENDS IN GENETICS

Neo-sex chromosomes in the black muntjac recapitulate incipient evolution of mammalian sex chromosomes

(2008) Qi Zhou et al.   GENOME BIOLOGY

Contrasting the Efficacy of Selection on the X and Autosomes in Drosophila

(2007) N. D. Singh et al.   MOLECULAR BIOLOGY AND EVOLUTION