The Demographic and Adaptive History of the African Green Monkey

From next-generation resequencing reads to a high-quality variant data set

(2016) S P Pfeifer   HEREDITY

Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes

(2016) Jerome Kelleher et al.   PLoS Computational Biology

Sequencing strategies and characterization of 721 vervet monkey genomes for future genetic analyses of medically relevant traits

(2015) Yu S. Huang et al.   BMC BIOLOGY

The genome of the vervet (Chlorocebus aethiops sabaeus)

(2015) Wesley C. Warren et al.   GENOME RESEARCH

The consequences of not accounting for background selection in demographic inference

(2015) Gregory B. Ewing et al.   MOLECULAR ECOLOGY

The past, present and future of genomic scans for selection

(2015) Jeffrey D. Jensen et al.   MOLECULAR ECOLOGY

Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals

(2014) Anthony Youzhi Cheng et al.   BIOINFORMATICS

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

(2014) Tae-Ho Lee et al.   BMC GENOMICS

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Evolutionary Origins of Human Herpes Simplex Viruses 1 and 2

(2014) Joel O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications

(2014) Andy Rimmer et al.   NATURE GENETICS

Thinking too positive? Revisiting current methods of population genetic selection inference

(2014) Claudia Bank et al.   TRENDS IN GENETICS

On the unfounded enthusiasm for soft selective sweeps

(2014) Jeffrey D Jensen   Nature Communications

Mitochondrial Diversity and Distribution of African Green Monkeys (ChlorocebusGray, 1870)

(2013) TANJA HAUS et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Characterizing Bias in Population Genetic Inferences from Low-Coverage Sequencing Data

(2013) Eunjung Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Great ape genetic diversity and population history

(2013) Javier Prado-Martinez et al.   NATURE

Next-Generation Museomics Disentangles One of the Largest Primate Radiations

(2013) Katerina Guschanski et al.   SYSTEMATIC BIOLOGY

Newly Discovered Bale Monkey Populations in Forest Fragments in Southern Ethiopia: Evidence of Crop Raiding, Hybridization With Grivets, and Other Conservation Threats

(2012) ADDISU MEKONNEN et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Recent Progress in Polymorphism-Based Population Genetic Inference

(2012) Jessica L. Crisci et al.   JOURNAL OF HEREDITY

Heavily male-biased long-distance dispersal of orang-utans (genus:Pongo), as revealed by Y-chromosomal and mitochondrial genetic markers

(2012) PIRMIN NIETLISBACH et al.   MOLECULAR ECOLOGY

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Spontaneous Emergence, Imitation and Spread of Alternative Foraging Techniques among Groups of Vervet Monkeys

(2012) Erica van de Waal et al.   PLoS One

Improving SNP discovery by base alignment quality

(2011) H. Li   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Bonobos Fall within the Genomic Variation of Chimpanzees

(2011) Anne Fischer et al.   PLoS One

A Molecular Phylogeny of Living Primates

(2011) Polina Perelman et al.   PLoS Genetics

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure

(2010) A. C. Stone et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS