SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets

(2012) N. Alachiotis et al.   BIOINFORMATICS

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Inference of Site Frequency Spectra From High-Throughput Sequence Data: Quantification of Selection on Nonsynonymous and Synonymous Sites in Humans

(2011) Peter D. Keightley et al.   GENETICS

Selective Sweep of a cis-Regulatory Sequence in a Non-African Population of Drosophila melanogaster

(2011) S. S. Saminadin-Peter et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory

(2011) Daniel Živković et al.   THEORETICAL POPULATION BIOLOGY

MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus

(2010) Gregory Ewing et al.   BIOINFORMATICS

Searching for Footprints of Positive Selection in Whole-Genome SNP Data From Nonequilibrium Populations

(2010) P. Pavlidis et al.   GENETICS

Recent Strong Positive Selection on Drosophila melanogaster HDAC6, a Gene Encoding a Stress Surveillance Factor, as Revealed by Population Genomic Analysis

(2009) N. Svetec et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and flexible simulation of DNA sequence data

(2008) G. K. Chen et al.   GENOME RESEARCH