Evolutionary Origins of Human Herpes Simplex Viruses 1 and 2

A synchronized global sweep of the internal genes of modern avian influenza virus

(2014) Michael Worobey et al.   NATURE

On the Validity of Evolutionary Models with Site-Specific Parameters

(2014) Konrad Scheffler et al.   PLoS One

Genome sequence of a chimpanzee herpesvirus and its relation to other primate alphaherpesviruses

(2013) Alberto Severini et al.   ARCHIVES OF VIROLOGY

A Case for the Ancient Origin of Coronaviruses

(2013) J. O. Wertheim et al.   JOURNAL OF VIROLOGY

Using HSV-1 Genome Phylogenetics to Track Past Human Migrations

(2013) Aaron W. Kolb et al.   PLoS One

A Complete Skull from Dmanisi, Georgia, and the Evolutionary Biology of Early Homo

(2013) D. Lordkipanidze et al.   SCIENCE

Pangaea and the Out-of-Africa Model of Varicella-Zoster Virus Evolution and Phylogeography

(2012) Charles Grose   JOURNAL OF VIROLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Autosomal Analysis Gives No Genetic Evidence for Complex Speciation of Humans and Chimpanzees

(2011) Masato Yamamichi et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

(2011) Sergei L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Purifying Selection Can Obscure the Ancient Age of Viral Lineages

(2011) Joel O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Genome-Wide Comparative Evolutionary Analysis of Herpes Simplex Virus Type 1 and Varicella Zoster Virus

(2011) Peter Norberg et al.   PLoS One

Evolutionary History of Chimpanzees Inferred from Complete Mitochondrial Genomes

(2010) A. Bjork et al.   MOLECULAR BIOLOGY AND EVOLUTION

More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure

(2010) A. C. Stone et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Family level phylogenies reveal modes of macroevolution in RNA viruses

(2010) A. Kitchen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Many-core algorithms for statistical phylogenetics

(2009) M. A. Suchard et al.   BIOINFORMATICS

Mitochondrial phylogeography of baboons (Papio spp.) – Indication for introgressive hybridization?

(2009) Dietmar Zinner et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary Fingerprinting of Genes

(2009) S. L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial DNA analysis reveals Plio-Pleistocene diversification within the chacma baboon

(2009) R. Sithaldeen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Patterns of macroevolution among Primates inferred from a supermatrix of mitochondrial and nuclear DNA

(2009) P-.H. Fabre et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Dating the emergence of pandemic influenza viruses

(2009) Gavin J. D. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

(2008) Michael Worobey et al.   NATURE