Advances in metabolome information retrieval: turning chemistry into biology. Part II: biological information recovery
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Title
Advances in metabolome information retrieval: turning chemistry into biology. Part II: biological information recovery
Authors
Keywords
Omics, Metabolomics, Metabolome, Mass spectrometry, Nuclear magnetic resonance, Chemometrics
Journal
JOURNAL OF INHERITED METABOLIC DISEASE
Volume 41, Issue 3, Pages 393-406
Publisher
Springer Nature
Online
2017-08-25
DOI
10.1007/s10545-017-0080-0
References
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Note: Only part of the references are listed.- Gas chromatography – mass spectrometry data processing made easy
- (2017) Lea G. Johnsen et al. JOURNAL OF CHROMATOGRAPHY A
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- (2017) Baninia Habchi et al. Metabolomics
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- (2017) Tao Huan et al. NATURE METHODS
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- (2017) Kwanjeera Wanichthanarak et al. PLoS One
- Chemometrics for ion mobility spectrometry data: recent advances and future prospects
- (2016) Ewa Szymańska et al. ANALYST
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- (2016) Marc Offroy et al. ANALYTICA CHIMICA ACTA
- Chemometric methods in data processing of mass spectrometry-based metabolomics: A review
- (2016) Lunzhao Yi et al. ANALYTICA CHIMICA ACTA
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- (2016) Karsten Suhre et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
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- (2016) Suvir Jain et al. BMC BIOINFORMATICS
- A Next Generation Multiscale View of Inborn Errors of Metabolism
- (2016) Carmen A. Argmann et al. Cell Metabolism
- A longitudinal analysis of the effects of age on the blood plasma metabolome in the common marmoset, Callithrix jacchus
- (2016) Jessica M. Hoffman et al. EXPERIMENTAL GERONTOLOGY
- Sample normalization methods in quantitative metabolomics
- (2016) Yiman Wu et al. JOURNAL OF CHROMATOGRAPHY A
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- (2016) Xiaotao Shen et al. Metabolomics
- NANS-mediated synthesis of sialic acid is required for brain and skeletal development
- (2016) Clara D M van Karnebeek et al. NATURE GENETICS
- Revealing disease-associated pathways by network integration of untargeted metabolomics
- (2016) Leila Pirhaji et al. NATURE METHODS
- Exome Sequencing and the Management of Neurometabolic Disorders
- (2016) Maja Tarailo-Graovac et al. NEW ENGLAND JOURNAL OF MEDICINE
- MBROLE 2.0—functional enrichment of chemical compounds
- (2016) Javier López-Ibáñez et al. NUCLEIC ACIDS RESEARCH
- Analytical pitfalls and challenges in clinical metabolomics
- (2016) Isabelle Kohler et al. Bioanalysis
- An exome array study of the plasma metabolome
- (2016) Eugene P. Rhee et al. Nature Communications
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- (2016) Bo Li et al. Scientific Reports
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- (2015) Frank Westad et al. ANALYTICA CHIMICA ACTA
- A tutorial review: Metabolomics and partial least squares-discriminant analysis – a marriage of convenience or a shotgun wedding
- (2015) Piotr S. Gromski et al. ANALYTICA CHIMICA ACTA
- Selective Paired Ion Contrast Analysis: A Novel Algorithm for Analyzing Postprocessed LC-MS Metabolomics Data Possessing High Experimental Noise
- (2015) Tytus D. Mak et al. ANALYTICAL CHEMISTRY
- From Metabolomics to Fluxomics: A Computational Procedure to Translate Metabolite Profiles into Metabolic Fluxes
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- Updates in metabolomics tools and resources: 2014-2015
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- Genetics of human metabolism: an update
- (2015) Gabi Kastenmüller et al. HUMAN MOLECULAR GENETICS
- Expanded newborn screening by mass spectrometry: New tests, future perspectives
- (2015) Daniela Ombrone et al. MASS SPECTROMETRY REVIEWS
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- Comparing the performance of biomedical clustering methods
- (2015) Christian Wiwie et al. NATURE METHODS
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- (2015) Marylyn D. Ritchie et al. NATURE REVIEWS GENETICS
- KEGG as a reference resource for gene and protein annotation
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- MetaboAnalyst 3.0—making metabolomics more meaningful
- (2015) Jianguo Xia et al. NUCLEIC ACIDS RESEARCH
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- Current status of newborn screening worldwide: 2015
- (2015) Bradford L. Therrell et al. SEMINARS IN PERINATOLOGY
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- (2015) Yulia B. Monakhova et al. TALANTA
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- (2015) Wei Liu et al. Scientific Reports
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- (2014) C. D. Broeckling et al. ANALYTICAL CHEMISTRY
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- (2013) J. Balog et al. Science Translational Medicine
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- XCMS Online: A Web-Based Platform to Process Untargeted Metabolomic Data
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- (2012) Joomi LEE et al. ANALYTICAL SCIENCES
- InCroMAP: integrated analysis of cross-platform microarray and pathway data
- (2012) C. Wrzodek et al. BIOINFORMATICS
- Modeling of leishmaniasis infection dynamics: novel application to the design of effective therapies
- (2012) Bettina M Länger et al. BMC Systems Biology
- Fluxomics - connecting ‘omics analysis and phenotypes
- (2012) Gal Winter et al. ENVIRONMENTAL MICROBIOLOGY
- Independent component analysis in non-hypothesis driven metabolomics: Improvement of pattern discovery and simplification of biological data interpretation demonstrated with plasma samples of exercising humans
- (2012) Xiang Li et al. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
- A compendium of inborn errors of metabolism mapped onto the human metabolic network
- (2012) Swagatika Sahoo et al. Molecular BioSystems
- HMDB 3.0—The Human Metabolome Database in 2013
- (2012) David S. Wishart et al. NUCLEIC ACIDS RESEARCH
- Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges
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- CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets
- (2011) Carsten Kuhl et al. ANALYTICAL CHEMISTRY
- MPEA—metabolite pathway enrichment analysis
- (2011) Matti Kankainen et al. BIOINFORMATICS
- AStream: an R package for annotating LC/MS metabolomic data
- (2011) Arnald Alonso et al. BIOINFORMATICS
- Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
- (2011) Atanas Kamburov et al. BIOINFORMATICS
- Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data
- (2011) Alla Karnovsky et al. BIOINFORMATICS
- Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data
- (2011) Jan Krumsiek et al. BMC Systems Biology
- A method for handling metabonomics data from liquid chromatography/mass spectrometry: combinational use of support vector machine recursive feature elimination, genetic algorithm and random forest for feature selection
- (2011) Xiaohui Lin et al. Metabolomics
- WikiPathways: building research communities on biological pathways
- (2011) T. Kelder et al. NUCLEIC ACIDS RESEARCH
- iPath2.0: interactive pathway explorer
- (2011) Takuji Yamada et al. NUCLEIC ACIDS RESEARCH
- A Differential Network Approach to Exploring Differences between Biological States: An Application to Prediabetes
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- Pathos: A web facility that uses metabolic maps to display experimental changes in metabolites identified by mass spectrometry
- (2011) David P. Leader et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- The Roots of Bioinformatics in Theoretical Biology
- (2011) Paulien Hogeweg PLoS Computational Biology
- Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data
- (2010) F. Garcia-Alcalde et al. BIOINFORMATICS
- Network medicine: a network-based approach to human disease
- (2010) Albert-László Barabási et al. NATURE REVIEWS GENETICS
- MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data
- (2010) J. Xia et al. NUCLEIC ACIDS RESEARCH
- Metabolomics and fluxomics approaches
- (2008) Marta Cascante et al. Essays in Biochemistry
- Metabolite identification via the Madison Metabolomics Consortium Database
- (2008) Qiu Cui et al. NATURE BIOTECHNOLOGY
- Independent component analysis and its applications in signal processing for analytical chemistry
- (2008) Guoqing Wang et al. TRAC-TRENDS IN ANALYTICAL CHEMISTRY
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