WikiPathways: building research communities on biological pathways

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

WebGestalt2: an updated and expanded version of the Web-based Gene Set Analysis Toolkit

(2010) Dexter Duncan et al.   BMC BIOINFORMATICS

Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes

(2010) Danyel G.J. Jennen et al.   DRUG DISCOVERY TODAY

The Micronutrient Genomics Project: a community-driven knowledge base for micronutrient research

(2010) Ben van Ommen et al.   Genes and Nutrition

The BioPAX community standard for pathway data sharing

(2010) Emek Demir et al.   NATURE BIOTECHNOLOGY

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data

(2010) Dorothea Emig et al.   NUCLEIC ACIDS RESEARCH

Pathway Commons, a web resource for biological pathway data

(2010) E. G. Cerami et al.   NUCLEIC ACIDS RESEARCH

Entrez Gene: gene-centered information at NCBI

(2010) D. Maglott et al.   NUCLEIC ACIDS RESEARCH

Reactome: a database of reactions, pathways and biological processes

(2010) D. Croft et al.   NUCLEIC ACIDS RESEARCH

Examination of Apoptosis Signaling in Pancreatic Cancer by Computational Signal Transduction Analysis

(2010) Felix Rückert et al.   PLoS One

The PluriNetWork: An Electronic Representation of the Network Underlying Pluripotency in Mouse, and Its Applications

(2010) Anup Som et al.   PLoS One

The Gene Wiki: community intelligence applied to human gene annotation

(2009) Jon W. Huss et al.   NUCLEIC ACIDS RESEARCH

The NCBI BioSystems database

(2009) Lewis Y. Geer et al.   NUCLEIC ACIDS RESEARCH

Chemical Entities of Biological Interest: an update

(2009) Paula de Matos et al.   NUCLEIC ACIDS RESEARCH

BioPortal: ontologies and integrated data resources at the click of a mouse

(2009) N. F. Noy et al.   NUCLEIC ACIDS RESEARCH

Mining Biological Pathways Using WikiPathways Web Services

(2009) Thomas Kelder et al.   PLoS One

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

(2009) Chunlei Wu et al.   GENOME BIOLOGY

Presenting and exploring biological pathways with PathVisio

(2008) Martijn P van Iersel et al.   BMC BIOINFORMATICS

The future of biocuration

(2008) Doug Howe et al.   NATURE

A Gene Wiki for Community Annotation of Gene Function

(2008) Jon W Huss et al.   PLOS BIOLOGY

WikiPathways: Pathway Editing for the People

(2008) Alexander R Pico et al.   PLOS BIOLOGY