Genome Expression Balance in a Triploid Trihybrid Vertebrate

Spreading Winge and flying high: The evolutionary importance of polyploidy after a century of study

(2016) Michael S. Barker et al.   AMERICAN JOURNAL OF BOTANY

Cryptic sex? Estimates of genome exchange in unisexual mole salamanders (Ambystomasp.)

(2016) H. Lisle Gibbs et al.   MOLECULAR ECOLOGY

Gene Expression Dosage Regulation in an Allopolyploid Fish

(2015) I Matos et al.   PLoS One

The Transcriptomes of the Crucian Carp Complex (Carassius auratus) Provide Insights into the Distinction between Unisexual Triploids and Sexual Diploids

(2014) Chun-Yan Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Evolutionary basis of mitonuclear discordance between sister species of mole salamanders (Ambystomasp.)

(2014) Robert D. Denton et al.   MOLECULAR ECOLOGY

Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution

(2014) Kevin Vanneste et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Novel Method for Analysis of Allele Specific Expression in Triploid Oryzias latipes Reveals Consistent Pattern of Allele Exclusion

(2014) Tzintzuni I. Garcia et al.   PLoS One

Polyploidy in Animals: Effects of Gene Expression on Sex Determination, Evolution and Ecology

(2013) B. Wertheim et al.   CYTOGENETIC AND GENOME RESEARCH

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Genome and gene duplications and gene expression divergence: a view from plants

(2012) Yupeng Wang et al.   Annals of the New York Academy of Sciences

Genomic asymmetry in allopolyploid plants: wheat as a model

(2012) M. Feldman et al.   JOURNAL OF EXPERIMENTAL BOTANY

RELATING HYBRID ADVANTAGE AND GENOME REPLACEMENT IN UNISEXUAL SALAMANDERS

(2011) Noah D. Charney   EVOLUTION

Genome duplication in amphibians and fish: an extended synthesis

(2011) B. K. Mable et al.   JOURNAL OF ZOOLOGY

A single nucleotide polymorphism assay for the identification of unisexual Ambystoma Salamanders

(2011) KATHERINE R. GREENWALD et al.   Molecular Ecology Resources

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

GENETIC ARCHITECTURE OF METABOLIC RATE: ENVIRONMENT SPECIFIC EPISTASIS BETWEEN MITOCHONDRIAL AND NUCLEAR GENES IN AN INSECT

(2010) Göran Arnqvist et al.   EVOLUTION

The evolutionary history of the allopolyploid Squalius alburnoides (Cyprinidae) complex in the northern Iberian Peninsula

(2010) C Cunha et al.   HEREDITY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Heterosis

(2010) J. A. Birchler et al.   PLANT CELL

Gene expression regulation and lineage evolution: the North and South tale of the hybrid polyploid Squalius alburnoides complex

(2010) I. Pala et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Transcriptional differences between triploid and diploid Chinook salmon (Oncorhynchus tshawytscha) during live Vibrio anguillarum challenge

(2009) B Ching et al.   HEREDITY

Sex in unisexual salamanders: discovery of a new sperm donor with ancient affinities

(2009) J P Bogart et al.   HEREDITY

Can phosphorus limitation contribute to the maintenance of sex? A test of a key assumption

(2009) M. NEIMAN et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Additional Distributional Records of Ambystoma Laterale, A. Jeffersonianum (Amphibia: Caudata) and Their Unisexual Kleptogens in Northeastern North America

(2008) James P. Bogart et al.   AMERICAN MUSEUM NOVITATES

Does Phylogenetic Distance Between Parental Genomes Govern the Success of Polyploids

(2008) Richard J. A. Buggs et al.   CASTANEA

Dosage Compensation by Gene-Copy Silencing in a Triploid Hybrid Fish

(2008) Irene Pala et al.   CURRENT BIOLOGY

Ecological selection maintains cytonuclear incompatibilities in hybridizing sunflowers

(2008) Julianno B. M. Sambatti et al.   ECOLOGY LETTERS

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

(2008) Lyris M. F. de Godoy et al.   NATURE