Gene Expression Dosage Regulation in an Allopolyploid Fish

Natural Pathways towards Polyploidy in Animals: TheSqualius alburnoidesFish Complex as a Model System to Study Genome Size and Genome Reorganization in Polyploids

(2013) M.J. Collares-Pereira et al.   CYTOGENETIC AND GENOME RESEARCH

Polyploids and hybrids in changing environments: winners or losers in the struggle for adaptation?

(2013) B K Mable   HEREDITY

Protein Expression Under Pressure

(2013) C. Vogel   SCIENCE

Fantastically plastic: fish larvae equipped for a new world

(2013) Karin Pittman et al.   Reviews in Aquaculture

Revisiting Global Gene Expression Analysis

(2012) Jakob Lovén et al.   CELL

Genomic asymmetry in allopolyploid plants: wheat as a model

(2012) M. Feldman et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genomic and transcriptomic alterations following hybridisation and genome doubling in trigenomic allohexaploid Brassica carinata × Brassica rapa

(2012) Y. Xu et al.   PLANT BIOLOGY

Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq

(2012) A. Kakumanu et al.   PLANT PHYSIOLOGY

Global Analysis of the Small RNA Transcriptome in Different Ploidies and Genomic Combinations of a Vertebrate Complex – The Squalius alburnoides

(2012) Angela Inácio et al.   PLoS One

Functional transcriptomics of a migrating cell in Caenorhabditis elegans

(2012) E. M. Schwarz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene balance hypothesis: Connecting issues of dosage sensitivity across biological disciplines

(2012) J. A. Birchler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordinating genome expression with cell size

(2012) Samuel Marguerat et al.   TRENDS IN GENETICS

Ploidy and Hybridity Effects on Growth Vigor and Gene Expression in Arabidopsis thaliana Hybrids and Their Parents

(2012) Marisa Miller et al.   G3-Genes Genomes Genetics

Guidelines for the treatment of animals in behavioural research and teaching

(2011)   ANIMAL BEHAVIOUR

Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome

(2011) Bonnie A Fraser et al.   BMC GENOMICS

Genome duplication in amphibians and fish: an extended synthesis

(2011) B. K. Mable et al.   JOURNAL OF ZOOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Homoeolog-specific retention and use in allotetraploid Arabidopsis suecica depends on parent of origin and network partners

(2011) Peter L Chang et al.   GENOME BIOLOGY

Quantifying Whole Transcriptome Size, a Prerequisite for Understanding Transcriptome Evolution Across Species: An Example from a Plant Allopolyploid

(2010) Jeremy E. Coate et al.   Genome Biology and Evolution

Regulatory divergence in Drosophila revealed by mRNA-seq

(2010) C. J. McManus et al.   GENOME RESEARCH

Scaleprinting: individual identification based on scale patterns

(2010) M. Morgado-Santos et al.   JOURNAL OF FISH BIOLOGY

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

Heterosis

(2010) J. A. Birchler et al.   PLANT CELL

Gene expression regulation and lineage evolution: the North and South tale of the hybrid polyploid Squalius alburnoides complex

(2010) I. Pala et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Control of Transcription by Cell Size

(2010) Chia-Yung Wu et al.   PLOS BIOLOGY

Body shape evolution among ploidy levels of theSqualius alburnoideshybrid complex (Teleostei, Cyprinidae)

(2009) C. CUNHA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis

(2008) Robert M Stupar et al.   BMC PLANT BIOLOGY

Dosage Compensation by Gene-Copy Silencing in a Triploid Hybrid Fish

(2008) Irene Pala et al.   CURRENT BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The origin and evolution of a unisexual hybrid: Poecilia formosa

(2008) K.P Lampert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES