- Home
- Publications
- Publication Search
- Publication Details
Title
Insights into Epigenome Evolution from Animal and Plant Methylomes
Authors
Keywords
-
Journal
Genome Biology and Evolution
Volume 9, Issue 11, Pages 3189-3201
Publisher
Oxford University Press (OUP)
Online
2017-09-25
DOI
10.1093/gbe/evx203
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Evolution of the sperm methylome of primates is associated with retrotransposon insertions and genome instability
- (2017) Kei Fukuda et al. HUMAN MOLECULAR GENETICS
- TET-mediated active DNA demethylation: mechanism, function and beyond
- (2017) Xiaoji Wu et al. NATURE REVIEWS GENETICS
- The sources of adaptive variation
- (2017) Deborah Charlesworth et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Integration of CpG-free DNA induces de novo methylation of CpG islands in pluripotent stem cells
- (2017) Yuta Takahashi et al. SCIENCE
- Impact of cytosine methylation on DNA binding specificities of human transcription factors
- (2017) Yimeng Yin et al. SCIENCE
- Gene and transposable element methylation in great tit (Parus major) brain and blood
- (2016) Martijn F. L. Derks et al. BMC GENOMICS
- Portraits of TET-mediated DNA hydroxymethylation in cancer
- (2016) Jana Jeschke et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Comparative Methylome Analyses Identify Epigenetic Regulatory Loci of Human Brain Evolution
- (2016) Isabel Mendizabal et al. MOLECULAR BIOLOGY AND EVOLUTION
- The multivariate association between genomewide DNA methylation and climate across the range ofArabidopsis thaliana
- (2016) Thomas E. Keller et al. MOLECULAR ECOLOGY
- Genetic sources of population epigenomic variation
- (2016) Aaron Taudt et al. NATURE REVIEWS GENETICS
- Transcription factors as readers and effectors of DNA methylation
- (2016) Heng Zhu et al. NATURE REVIEWS GENETICS
- The molecular hallmarks of epigenetic control
- (2016) C. David Allis et al. NATURE REVIEWS GENETICS
- Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved
- (2016) Hannah K. Long et al. NUCLEIC ACIDS RESEARCH
- On the origin and evolutionary consequences of gene body DNA methylation
- (2016) Adam J. Bewick et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolution of Epigenetic Regulation in Vertebrate Genomes
- (2016) Rebecca F. Lowdon et al. TRENDS IN GENETICS
- Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns
- (2016) Matthew Huska et al. PLoS Computational Biology
- The Epigenomic Landscape of Prokaryotes
- (2016) Matthew J. Blow et al. PLoS Genetics
- CG Methylation Covaries with Differential Gene Expression between Leaf and Floral Bud Tissues of Brachypodium distachyon
- (2016) Kyria Roessler et al. PLoS One
- Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq
- (2015) Jinxiu Li et al. BMC GENOMICS
- DNA Methylation on N6-Adenine in C. elegans
- (2015) Eric Lieberman Greer et al. CELL
- Regulation ofHoxorthologues in the oysterCrassostrea gigasevidences a functional role for promoter DNA methylation in an invertebrate
- (2015) Emma Saint-Carlier et al. FEBS LETTERS
- Whole-genome bisulfite sequencing maps from multiple human tissues reveal novel CpG islands associated with tissue-specific regulation
- (2015) Isabel Mendizabal et al. HUMAN MOLECULAR GENETICS
- DNA Methylation in Basal Metazoans: Insights from Ctenophores
- (2015) Emily C. Dabe et al. INTEGRATIVE AND COMPARATIVE BIOLOGY
- Evolutionary Transition of Promoter and Gene Body DNA Methylation across Invertebrate–Vertebrate Boundary
- (2015) Thomas E. Keller et al. MOLECULAR BIOLOGY AND EVOLUTION
- Competition between DNA methylation and transcription factors determines binding of NRF1
- (2015) Silvia Domcke et al. NATURE
- Methylation QTLs in the developing brain and their enrichment in schizophrenia risk loci
- (2015) Eilis Hannon et al. NATURE NEUROSCIENCE
- The interplay between DNA methylation and sequence divergence in recent human evolution
- (2015) Irene Hernando-Herraez et al. NUCLEIC ACIDS RESEARCH
- Rate, spectrum, and evolutionary dynamics of spontaneous epimutations
- (2015) Adriaan van der Graaf et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The epigenomic landscape of African rainforest hunter-gatherers and farmers
- (2015) Maud Fagny et al. Nature Communications
- Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage
- (2015) Jörg Hagmann et al. PLoS Genetics
- GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands
- (2015) Florent Lassalle et al. PLoS Genetics
- DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
- (2015) Manu J Dubin et al. eLife
- Genome-wide DNA methylation analysis of Haloferax volcanii H26 and identification of DNA methyltransferase related PD-(D/E)XK nuclease family protein HVO_A0006
- (2015) Matthew Ouellette et al. Frontiers in Microbiology
- Global DNA cytosine methylation as an evolving trait: phylogenetic signal and correlated evolution with genome size in angiosperms
- (2015) Conchita Alonso et al. Frontiers in Genetics
- Transgenerational Epigenetic Inheritance: Myths and Mechanisms
- (2014) Edith Heard et al. CELL
- Fundamental diversity of human CpG islands at multiple biological levels
- (2014) Jia Zeng et al. Epigenetics
- Purifying Selection, Drift, and Reversible Mutation with Arbitrarily High Mutation Rates
- (2014) Brian Charlesworth et al. GENETICS
- REBASE—a database for DNA restriction and modification: enzymes, genes and genomes
- (2014) Richard J. Roberts et al. NUCLEIC ACIDS RESEARCH
- DNA Sequence Explains Seemingly Disordered Methylation Levels in Partially Methylated Domains of Mammalian Genomes
- (2014) Dimos Gaidatzis et al. PLoS Genetics
- Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization
- (2014) Danelle K. Seymour et al. PLoS Genetics
- Synthetic CpG islands reveal DNA sequence determinants of chromatin structure
- (2014) Elisabeth Wachter et al. eLife
- High-throughput engineering of a mammalian genome reveals building principles of methylation states at CG rich regions
- (2014) Arnaud R Krebs et al. eLife
- Contribution of genetic variation to transgenerational inheritance of DNA methylation
- (2014) Allan F McRae et al. GENOME BIOLOGY
- Patterning and Regulatory Associations of DNA Methylation Are Mirrored by Histone Modifications in Insects
- (2013) Brendan G. Hunt et al. Genome Biology and Evolution
- Age-associated epigenetic drift: implications, and a case of epigenetic thrift?
- (2013) A. E. Teschendorff et al. HUMAN MOLECULAR GENETICS
- The Function of Intragenic DNA Methylation: Insights from Insect Epigenomes
- (2013) B. G. Hunt et al. INTEGRATIVE AND COMPARATIVE BIOLOGY
- Patterns of population epigenomic diversity
- (2013) Robert J. Schmitz et al. NATURE
- Charting a dynamic DNA methylation landscape of the human genome
- (2013) Michael J. Ziller et al. NATURE
- Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations
- (2013) S. R. Eichten et al. PLANT CELL
- Transgenerational Variations in DNA Methylation Induced by Drought Stress in Two Rice Varieties with Distinguished Difference to Drought Resistance
- (2013) Xiaoguo Zheng et al. PLoS One
- Gene body methylation is conserved between plant orthologs and is of evolutionary consequence
- (2013) S. Takuno et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Amborella Genome and the Evolution of Flowering Plants
- (2013) et al. SCIENCE
- DNA methylation presents distinct binding sites for human transcription factors
- (2013) Shaohui Hu et al. eLife
- Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc
- (2013) Mackenzie R. Gavery et al. PeerJ
- Divergent Whole-Genome Methylation Maps of Human and Chimpanzee Brains Reveal Epigenetic Basis of Human Regulatory Evolution
- (2012) Jia Zeng et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Evidence for Widespread GC-biased Gene Conversion in Eukaryotes
- (2012) Eugénie Pessia et al. Genome Biology and Evolution
- The Evolution of Invertebrate Gene Body Methylation
- (2012) S. Sarda et al. MOLECULAR BIOLOGY AND EVOLUTION
- Understanding transgenerational epigenetic inheritance via the gametes in mammals
- (2012) Lucia Daxinger et al. NATURE REVIEWS GENETICS
- Widespread dynamic DNA methylation in response to biotic stress
- (2012) R. H. Dowen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The correlation of genome size and DNA methylation rate in metazoans
- (2012) Marcus Lechner et al. THEORY IN BIOSCIENCES
- Epigenome-Wide Scans Identify Differentially Methylated Regions for Age and Age-Related Phenotypes in a Healthy Ageing Population
- (2012) Jordana T. Bell et al. PLoS Genetics
- Primate CpG Islands Are Maintained by Heterogeneous Evolutionary Regimes Involving Minimal Selection
- (2011) Netta Mendelson Cohen et al. CELL
- Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly
- (2011) S. Takuno et al. MOLECULAR BIOLOGY AND EVOLUTION
- Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
- (2011) Claude Becker et al. NATURE
- Identification of genetic elements that autonomously determine DNA methylation states
- (2011) Florian Lienert et al. NATURE GENETICS
- Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants
- (2011) R. J. Schmitz et al. SCIENCE
- DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
- (2011) Jordana T Bell et al. GENOME BIOLOGY
- Genetic Control of Individual Differences in Gene-Specific Methylation in Human Brain
- (2010) Dandan Zhang et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Computational approaches for understanding the evolution of DNA methylation in animals
- (2010) Soojin V. Yi et al. Epigenetics
- DNA Methylation and Genome Evolution in Honeybee: Gene Length, Expression, Functional Enrichment Covary with the Evolutionary Signature of DNA Methylation
- (2010) Jia Zeng et al. Genome Biology and Evolution
- The Amphimedon queenslandica genome and the evolution of animal complexity
- (2010) Mansi Srivastava et al. NATURE
- The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana
- (2010) S. Ossowski et al. SCIENCE
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- (2010) A. Zemach et al. SCIENCE
- The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers
- (2010) Frank Lyko et al. PLOS BIOLOGY
- Orphan CpG Islands Identify Numerous Conserved Promoters in the Mammalian Genome
- (2010) Robert S. Illingworth et al. PLoS Genetics
- Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain
- (2010) J. Raphael Gibbs et al. PLoS Genetics
- CpG islands - ‘A rough guide’
- (2009) Robert S. Illingworth et al. FEBS LETTERS
- Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
- (2009) Akiko Doi et al. NATURE GENETICS
- DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera
- (2009) N. Elango et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- DNA Methylation and Structural and Functional Bimodality of Vertebrate Promoters
- (2008) N. Elango et al. MOLECULAR BIOLOGY AND EVOLUTION
- DNA methylation landscapes: provocative insights from epigenomics
- (2008) Miho M. Suzuki et al. NATURE REVIEWS GENETICS
- A Novel CpG Island Set Identifies Tissue-Specific Methylation at Developmental Gene Loci
- (2008) Robert Illingworth et al. PLOS BIOLOGY
- Mutations of Different Molecular Origins Exhibit Contrasting Patterns of Regional Substitution Rate Variation
- (2008) Navin Elango et al. PLoS Computational Biology
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started