Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns

Whole-genome bisulfite sequencing maps from multiple human tissues reveal novel CpG islands associated with tissue-specific regulation

(2015) Isabel Mendizabal et al.   HUMAN MOLECULAR GENETICS

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets

(2015) Takaya Saito et al.   PLoS One

Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features

(2014) Mahmoud Ghandi et al.   PLoS Computational Biology

Principles of nucleation of H3K27 methylation during embryonic development

(2013) S. J. van Heeringen et al.   GENOME RESEARCH

Charting a dynamic DNA methylation landscape of the human genome

(2013) Michael J. Ziller et al.   NATURE

Fast Computation and Applications of Genome Mappability

(2012) Thomas Derrien et al.   PLoS One

CpG islands and the regulation of transcription

(2011) A. M. Deaton et al.   GENES & DEVELOPMENT

Discriminative prediction of mammalian enhancers from DNA sequence

(2011) D. Lee et al.   GENOME RESEARCH

Bio-CAP: a versatile and highly sensitive technique to purify and characterise regions of non-methylated DNA

(2011) Neil P. Blackledge et al.   NUCLEIC ACIDS RESEARCH

Redefining CpG islands using hidden Markov models

(2010) H. Wu et al.   BIOSTATISTICS

Divergence of CpG island promoters: A consequence or cause of evolution?

(2010) Jafar Sharif et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

mGene: Accurate SVM-based gene finding with an application to nematode genomes

(2009) G. Schweikert et al.   GENOME RESEARCH

Every genome sequence needs a good map

(2009) H. A. Lewin et al.   GENOME RESEARCH

DNA Methylation and Structural and Functional Bimodality of Vertebrate Promoters

(2008) N. Elango et al.   MOLECULAR BIOLOGY AND EVOLUTION