Identification of miRNAs involved in DRG neurite outgrowth and their putative targets

miRNA Expression Change in Dorsal Root Ganglia After Peripheral Nerve Injury

(2016) Hsueh-Ling Chang et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

Regulatory mechanisms of microRNA expression

(2016) Lyudmila F. Gulyaeva et al.   Journal of Translational Medicine

Treatment with analgesics after mouse sciatic nerve injury does not alter expression of wound healing-associated genes

(2016) VanceP Lemmon et al.   Neural Regeneration Research

RegenBase: a knowledge base of spinal cord injury biology for translational research

(2016) Alison Callahan et al.   Database-The Journal of Biological Databases and Curation

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Epithelial microRNA-9a regulates dendrite growth through Fmi-Gq signaling inDrosophilasensory neurons

(2015) Yan Wang et al.   Developmental Neurobiology

Dynamic Change and Target Prediction of Axon-Specific MicroRNAs in Regenerating Sciatic Nerve

(2015) Monichan Phay et al.   PLoS One

Considerations for accurate gene expression measurement by reverse transcription quantitative PCR when analysing clinical samples

(2014) Rebecca Sanders et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

MicroRNA-132 Is Enriched in Developing Axons, Locally Regulates Rasa1 mRNA, and Promotes Axon Extension

(2014) M. L. Hancock et al.   JOURNAL OF NEUROSCIENCE

Minimum Information about a Spinal Cord Injury Experiment: A Proposed Reporting Standard for Spinal Cord Injury Experiments

(2014) Vance P. Lemmon et al.   JOURNAL OF NEUROTRAUMA

cJun promotes CNS axon growth

(2014) Jessica K. Lerch et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

Assessing the ceRNA Hypothesis with Quantitative Measurements of miRNA and Target Abundance

(2014) Rémy Denzler et al.   MOLECULAR CELL

Diversity and dynamics of the Drosophila transcriptome

(2014) James B. Brown et al.   NATURE

Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue

(2014) Ditte Lovatt et al.   NATURE METHODS

Differential expression of microRNAs in dorsal root ganglia after sciatic nerve injury

(2014) Xinan Yi et al.   Neural Regeneration Research

Cell-intrinsic requirement of Dscam1 isoform diversity for axon collateral formation

(2014) H. He et al.   SCIENCE

MicroRNA overexpression increases cortical neuronal vulnerability to injury

(2013) Jessie S. Truettner et al.   BRAIN RESEARCH

The Transcription Factor Serum Response Factor Stimulates Axon Regeneration through Cytoplasmic Localization and Cofilin Interaction

(2013) S. Stern et al.   JOURNAL OF NEUROSCIENCE

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

(2013) Zhigang Xue et al.   NATURE

Interplay of microRNAs, transcription factors and target genes: linking dynamic expression changes to function

(2013) Petr V. Nazarov et al.   NUCLEIC ACIDS RESEARCH

Multiple-to-Multiple Relationships between MicroRNAs and Target Genes in Gastric Cancer

(2013) Yutaka Hashimoto et al.   PLoS One

Cross-talk between KLF4 and STAT3 regulates axon regeneration

(2013) Song Qin et al.   Nature Communications

How MicroRNA and Transcription Factor Co-regulatory Networks Affect Osteosarcoma Cell Proliferation

(2013) Kathrin Poos et al.   PLoS Computational Biology

Neuroplasticity, axonal guidance and micro-RNA genes are associated with morphine self-administration behavior

(2012) Jenica D. Tapocik et al.   ADDICTION BIOLOGY

Functional screening identifies miRNAs inducing cardiac regeneration

(2012) Ana Eulalio et al.   NATURE

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

(2012) Daniel Ramsköld et al.   NATURE BIOTECHNOLOGY

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

microRNA-9 regulates axon extension and branching by targeting Map1b in mouse cortical neurons

(2012) Federico Dajas-Bailador et al.   NATURE NEUROSCIENCE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Isoform Diversity and Regulation in Peripheral and Central Neurons Revealed through RNA-Seq

(2012) Jessica K. Lerch et al.   PLoS One

Peripheral Nervous System Genes Expressed in Central Neurons Induce Growth on Inhibitory Substrates

(2012) William J. Buchser et al.   PLoS One

Combinatorial Action of miRNAs Regulates Transcriptional and Post-Transcriptional Gene Silencing following in vivo PNS Injury

(2012) Tadepalli Adilakshmi et al.   PLoS One

microRNA-222 Targeting PTEN Promotes Neurite Outgrowth from Adult Dorsal Root Ganglion Neurons following Sciatic Nerve Transection

(2012) Songlin Zhou et al.   PLoS One

Kruppel-like Factor 7 engineered for transcriptional activation promotes axon regeneration in the adult corticospinal tract

(2012) M. G. Blackmore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

miRNA-Mediated Gene Silencing by Translational Repression Followed by mRNA Deadenylation and Decay

(2012) S. Djuranovic et al.   SCIENCE

Specific miRNA Stabilization by Gld2-Catalyzed Monoadenylation

(2012) Andrea D’Ambrogio et al.   Cell Reports

Altered microRNA expression following sciatic nerve resection in dorsal root ganglia of rats

(2011) B. Yu et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Dicer-microRNA pathway is critical for peripheral nerve regeneration and functional recovery in vivo and regenerative axonogenesis in vitro

(2011) Di Wu et al.   EXPERIMENTAL NEUROLOGY

Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity

(2011) S. K. Wyman et al.   GENOME RESEARCH

Wallerian degeneration: gaining perspective on inflammatory events after peripheral nerve injury

(2011) Andrew D Gaudet et al.   Journal of Neuroinflammation

MicroRNAs Modulate Schwann Cell Response to Nerve Injury by Reinforcing Transcriptional Silencing of Dedifferentiation-Related Genes

(2011) A. Viader et al.   JOURNAL OF NEUROSCIENCE

Identification and functional analysis of novel micro-rnas in rat dorsal root ganglia after sciatic nerve resection

(2011) Shiying Li et al.   JOURNAL OF NEUROSCIENCE RESEARCH

Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs

(2011) David M Garcia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MicroRNA machinery responds to peripheral nerve lesion in an injury-regulated pattern

(2011) D. Wu et al.   NEUROSCIENCE

Early changes of microRNAs expression in the dorsal root ganglia following rat sciatic nerve transection

(2011) Songlin Zhou et al.   NEUROSCIENCE LETTERS

Axotomy-Induced miR-21 Promotes Axon Growth in Adult Dorsal Root Ganglion Neurons

(2011) Iain T. Strickland et al.   PLoS One

Spatial segregation of BDNF transcripts enables BDNF to differentially shape distinct dendritic compartments

(2011) G. Baj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Parsimonious Model for Gene Regulation by miRNAs

(2011) S. Djuranovic et al.   SCIENCE

Distinct Roles of c-Jun N-Terminal Kinase Isoforms in Neurite Initiation and Elongation during Axonal Regeneration

(2010) M. Barnat et al.   JOURNAL OF NEUROSCIENCE

High content screening of cortical neurons identifies novel regulators of axon growth

(2010) Murray G. Blackmore et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

Transcriptional profiling of intrinsic PNS factors in the postnatal mouse

(2010) Robin P. Smith et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

Mammalian microRNAs predominantly act to decrease target mRNA levels

(2010) Huili Guo et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Targeting microRNAs in cancer: rationale, strategies and challenges

(2010) Ramiro Garzon et al.   NATURE REVIEWS DRUG DISCOVERY

Aberrant microRNA expression in the brains of neurodegenerative diseases: miR-29a decreased in Alzheimer disease brains targets neurone navigator 3

(2010) M. Shioya et al.   NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY

miRNA malfunction causes spinal motor neuron disease

(2010) S. Haramati et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing

(2010) J. Q. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Testing significance relative to a fold-change threshold is a TREAT

(2009) D. J. McCarthy et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Axotomy-Induced Smad1 Activation Promotes Axonal Growth in Adult Sensory Neurons

(2009) H. Zou et al.   JOURNAL OF NEUROSCIENCE

Statistical methods for analysis of high-throughput RNA interference screens

(2009) Amanda Birmingham et al.   NATURE METHODS

KLF Family Members Regulate Intrinsic Axon Regeneration Ability

(2009) D. L. Moore et al.   SCIENCE

Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells

(2008) Alexander Marson et al.   CELL

Distinct Role of Long 3′ UTR BDNF mRNA in Spine Morphology and Synaptic Plasticity in Hippocampal Neurons

(2008) Juan Ji An et al.   CELL

Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model

(2008) Kimberly L Stark et al.   NATURE GENETICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Species and strain differences in rodent sciatic nerve anatomy: Implications for studies of neuropathic pain

(2008) Marcel Rigaud et al.   PAIN

Normalization of microRNA expression levels in quantitative RT-PCR assays: Identification of suitable reference RNA targets in normal and cancerous human solid tissues

(2008) H. J. Peltier et al.   RNA