Genome characteristics and environmental distribution of the first phage that infects the LD28 clade, a freshwater methylotrophic bacterial group
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Title
Genome characteristics and environmental distribution of the first phage that infects the LD28 clade, a freshwater methylotrophic bacterial group
Authors
Keywords
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Journal
ENVIRONMENTAL MICROBIOLOGY
Volume 19, Issue 11, Pages 4714-4727
Publisher
Wiley
Online
2017-09-19
DOI
10.1111/1462-2920.13936
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Note: Only part of the references are listed.- Complete ecological isolation and cryptic diversity in Polynucleobacter bacteria not resolved by 16S rRNA gene sequences
- (2016) Martin W Hahn et al. ISME Journal
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- (2016) Rohit Ghai et al. ISME Journal
- Plankton networks driving carbon export in the oligotrophic ocean
- (2016) Lionel Guidi et al. NATURE
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- (2016) Ana Georgina Cobián Güemes et al. Annual Review of Virology
- Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland
- (2016) Timofey Skvortsov et al. PLoS One
- Distinct Circular Single-Stranded DNA Viruses Exist in Different Soil Types
- (2015) Brian Reavy et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Methylotrophs in natural habitats: current insights through metagenomics
- (2015) Ludmila Chistoserdova APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Metagenomic assessment of viral diversity in Lake Matoaka, a temperate, eutrophic freshwater lake in southeastern Virginia, USA
- (2015) JC Green et al. AQUATIC MICROBIAL ECOLOGY
- When less is more: ‘slicing’ sequencing data improves read decoding accuracy andde novoassembly quality
- (2015) Stefano Lonardi et al. BIOINFORMATICS
- Polar freshwater cyanophage S-EIV1 represents a new widespread evolutionary lineage of phages
- (2015) C Chénard et al. ISME Journal
- The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign
- (2015) Michaela M Salcher et al. ISME Journal
- Expansion of Cultured Bacterial Diversity by Large-Scale Dilution-to-Extinction Culturing from a Single Seawater Sample
- (2015) Seung-Jo Yang et al. MICROBIAL ECOLOGY
- Rising to the challenge: accelerated pace of discovery transforms marine virology
- (2015) Jennifer R. Brum et al. NATURE REVIEWS MICROBIOLOGY
- Patterns and ecological drivers of ocean viral communities
- (2015) J. R. Brum et al. SCIENCE
- Spatial and temporal dynamics of virus occurrence in two freshwater lakes captured through metagenomic analysis
- (2015) Mohammad Mohiuddin et al. Frontiers in Microbiology
- Biodiversity and distribution of polar freshwater DNA viruses
- (2015) D. Aguirre de Carcer et al. Science Advances
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage
- (2014) Trevor W Ghylin et al. ISME Journal
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes
- (2014) David A. C. Beck et al. PLoS One
- FAN1 Activity on Asymmetric Repair Intermediates Is Mediated by an Atypical Monomeric Virus-type Replication-Repair Nuclease Domain
- (2014) Simon Pennell et al. Cell Reports
- Direct Assessment of Viral Diversity in Soils by Random PCR Amplification of Polymorphic DNA
- (2013) Sharath Srinivasiah et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics
- (2013) Alexander Eiler et al. ENVIRONMENTAL MICROBIOLOGY
- Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances
- (2013) Ching-Hung Tseng et al. ISME Journal
- Abundant SAR11 viruses in the ocean
- (2013) Yanlin Zhao et al. NATURE
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology
- (2013) Bonnie L. Hurwitz et al. PLoS One
- Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans
- (2013) I. Kang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Complete nucleotide sequence of Bacillus subtilis (natto) bacteriophage PM1, a phage associated with disruption of food production
- (2013) Kenichi Umene et al. VIRUS GENES
- The global virome: not as big as we thought?
- (2013) J Cesar Ignacio-Espinoza et al. Current Opinion in Virology
- Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics
- (2012) Bonnie L. Hurwitz et al. ENVIRONMENTAL MICROBIOLOGY
- Expression patterns reveal niche diversification in a marine microbial assemblage
- (2012) Scott M Gifford et al. ISME Journal
- Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium
- (2012) Paul Carini et al. ISME Journal
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics
- (2012) Simon Roux et al. PLoS One
- Easyfig: a genome comparison visualizer
- (2011) M. J. Sullivan et al. BIOINFORMATICS
- Synergistic metabolism of a broad range of C1 compounds in the marine methylotrophic bacterium HTCC2181
- (2011) Kimberly H. Halsey et al. ENVIRONMENTAL MICROBIOLOGY
- Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges
- (2011) Sijun Huang et al. ENVIRONMENTAL MICROBIOLOGY
- Viruses with More Than 1,000 Genes: Mamavirus, a New Acanthamoeba polyphagamimivirus Strain, and Reannotation of Mimivirus Genes
- (2011) Philippe Colson et al. Genome Biology and Evolution
- Vertical and longitudinal distribution patterns of different bacterioplankton populations in a canyon-shaped, deep prealpine lake
- (2011) Michaela M. Salcher et al. LIMNOLOGY AND OCEANOGRAPHY
- A Guide to the Natural History of Freshwater Lake Bacteria
- (2011) R. J. Newton et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- SyMAP v3.4: a turnkey synteny system with application to plant genomes
- (2011) Carol Soderlund et al. NUCLEIC ACIDS RESEARCH
- Limnohabitans planktonicus sp. nov. and Limnohabitans parvus sp. nov., planktonic betaproteobacteria isolated from a freshwater reservoir, and emended description of the genus Limnohabitans
- (2010) V. Kasalicky et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Environmental proteomics of microbial plankton in a highly productive coastal upwelling system
- (2010) Sarah M Sowell et al. ISME Journal
- CDD: a Conserved Domain Database for the functional annotation of proteins
- (2010) A. Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- A simple and efficient method for concentration of ocean viruses by chemical flocculation
- (2010) Seth G. John et al. Environmental Microbiology Reports
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Photosystem I gene cassettes are present in marine virus genomes
- (2009) Itai Sharon et al. NATURE
- Laboratory procedures to generate viral metagenomes
- (2009) Rebecca V Thurber et al. Nature Protocols
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High Diversity of the Viral Community from an Antarctic Lake
- (2009) A. Lopez-Bueno et al. SCIENCE
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- The small genome of an abundant coastal ocean methylotroph
- (2008) Stephen J. Giovannoni et al. ENVIRONMENTAL MICROBIOLOGY
- The virophage as a unique parasite of the giant mimivirus
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- Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools
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