Zymomonas mobilis as a model system for production of biofuels and biochemicals

Accounting for all sugars produced during integrated production of ethanol from lignocellulosic biomass

(2016) Daniel J. Schell et al.   BIORESOURCE TECHNOLOGY

Open fermentative production of fuel ethanol from food waste by an acid-tolerant mutant strain of Zymomonas mobilis

(2016) Kedong Ma et al.   BIORESOURCE TECHNOLOGY

An evaluation of dilute acid and ammonia fiber explosion pretreatment for cellulosic ethanol production

(2016) Anil Kuruvilla Mathew et al.   BIORESOURCE TECHNOLOGY

Use of mechanical refining to improve the production of low-cost sugars from lignocellulosic biomass

(2016) Junyeong Park et al.   BIORESOURCE TECHNOLOGY

Biological pretreatment of lignocellulosic biomass – An overview

(2016) Raveendran Sindhu et al.   BIORESOURCE TECHNOLOGY

Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars

(2016) Shihui Yang et al.   Biotechnology for Biofuels

DMR (deacetylation and mechanical refining) processing of corn stover achieves high monomeric sugar concentrations (230 g L−1) during enzymatic hydrolysis and high ethanol concentrations (>10% v/v) during fermentation without hydrolysate purification or concentration

(2016) Xiaowen Chen et al.   Energy & Environmental Science

The ecology of Zymomonas: a review

(2016) Patrick M. Weir   FOLIA MICROBIOLOGICA

Development of corn silk as a biocarrier for Zymomonas mobilis biofilms in ethanol production from rice straw

(2016) Tatsaporn Todhanakasem et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Very high gravity ethanol and fatty acid production of Zymomonas mobilis without amino acid and vitamin

(2016) Haoyong Wang et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Using global transcription machinery engineering (gTME) to improve ethanol tolerance of Zymomonas mobilis

(2016) Furong Tan et al.   Microbial Cell Factories

Reconstruction of a charge balanced genome-scale metabolic model to study the energy-uncoupled growth of Zymomonas mobilis ZM1

(2016) E. Motamedian et al.   Molecular BioSystems

DNA-guided genome editing using the Natronobacterium gregoryi Argonaute

(2016) Feng Gao et al.   NATURE BIOTECHNOLOGY

Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism

(2016) Suzanne M. Kosina et al.   ACS Synthetic Biology

Bioethanol production from algaeSpirogyra hyalinausingZymomonas mobilis

(2016) Sulfahri et al.   Biofuels-UK

The Low Energy-Coupling Respiration in Zymomonas mobilis Accelerates Flux in the Entner-Doudoroff Pathway

(2016) Reinis Rutkis et al.   PLoS One

Improving furfural tolerance of Zymomonas mobilis by rewiring a sigma factor RpoD protein

(2015) Fu-Rong Tan et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Adaptive laboratory evolution of ethanologenic Zymomonas mobilis strain tolerant to furfural and acetic acid inhibitors

(2015) Zong-Xia Shui et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcriptional analysis of adaptation to high glucose concentrations in Zymomonas mobilis

(2015) Kun Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

High-throughput sequencing reveals adaptation-induced mutations in pentose-fermenting strains ofZymomonas mobilis

(2015) Kori L. Dunn et al.   BIOTECHNOLOGY AND BIOENGINEERING

High tolerance and physiological mechanism ofZymomonas mobilisto phenolic inhibitors in ethanol fermentation of corncob residue

(2015) Hanqi Gu et al.   BIOTECHNOLOGY AND BIOENGINEERING

Transcriptome analysis of Zymomonas mobilis ZM4 reveals mechanisms of tolerance and detoxification of phenolic aldehyde inhibitors from lignocellulose pretreatment

(2015) Xia Yi et al.   Biotechnology for Biofuels

Techno-economic analysis of the deacetylation and disk refining process: characterizing the effect of refining energy and enzyme usage on minimum sugar selling price and minimum ethanol selling price

(2015) Xiaowen Chen et al.   Biotechnology for Biofuels

Improving a recombinant Zymomonas mobilis strain 8b through continuous adaptation on dilute acid pretreated corn stover hydrolysate

(2015) Ali Mohagheghi et al.   Biotechnology for Biofuels

Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation

(2015) Jose Serate et al.   Biotechnology for Biofuels

Microscale and miniscale fermentation and screening

(2015) Clemens Lattermann et al.   CURRENT OPINION IN BIOTECHNOLOGY

Alcoholic fermentation ofSaccharomyces cerevisiae,Pichia stipitisandZymomonas mobilisin the presence of inhibitory compounds and seawater

(2015) Fabiano Avelino Gonçalves et al.   JOURNAL OF BASIC MICROBIOLOGY

N2gas is an effective fertilizer for bioethanol production byZymomonas mobilis

(2015) Timothy A. Kremer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discovery of Ethanol-Responsive Small RNAs in Zymomonas mobilis

(2014) Seung Hee Cho et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Expression of a xylose-specific transporter improves ethanol production by metabolically engineered Zymomonas mobilis

(2014) Kori L. Dunn et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Zymomonas mobilis: a novel platform for future biorefineries

(2014) Ming He et al.   Biotechnology for Biofuels

Improving xylose utilization by recombinant Zymomonas mobilis strain 8b through adaptation using 2-deoxyglucose

(2014) Ali Mohagheghi et al.   Biotechnology for Biofuels

Insights into acetate toxicity in Zymomonas mobilis8b using different substrates

(2014) Shihui Yang et al.   Biotechnology for Biofuels

Studying the rapid bioconversion of lignocellulosic sugars into ethanol using high cell density fermentations with cell recycle

(2014) Cory Sarks et al.   Biotechnology for Biofuels

Recent advances in the evolutionary engineering of industrial biocatalysts

(2014) James D. Winkler et al.   GENOMICS

CRISPR-Cas systems for editing, regulating and targeting genomes

(2014) Jeffry D Sander et al.   NATURE BIOTECHNOLOGY

Biofilm production by Zymomonas mobilis enhances ethanol production and tolerance to toxic inhibitors from rice bran hydrolysate

(2014) Tatsaporn Todhanakasem et al.   New Biotechnology

Fusion of Pyruvate Decarboxylase and Alcohol Dehydrogenase Increases Ethanol Production in Escherichia coli

(2014) Aleksandra J. Lewicka et al.   ACS Synthetic Biology

Modeling of Zymomonas mobilis central metabolism for novel metabolic engineering strategies

(2014) Uldis Kalnenieks et al.   Frontiers in Microbiology

Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics

(2014) Shihui Yang et al.   Frontiers in Microbiology

Connecting lignin-degradation pathway with pre-treatment inhibitor sensitivity of Cupriavidus necator

(2014) Wei Wang et al.   Frontiers in Microbiology

Metabolic engineering of yeasts by heterologous enzyme production for degradation of cellulose and hemicellulose from biomass: a perspective

(2014) William Kricka et al.   Frontiers in Microbiology

Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification

(2014) David H. Keating et al.   Frontiers in Microbiology

Improvement of ethanol productivity and energy efficiency by degradation of inhibitors using recombinantZymomonas mobilis(pHW20a-fdh)

(2013) Hong-Wei Dong et al.   BIOTECHNOLOGY AND BIOENGINEERING

Inhibition of growth of Zymomonas mobilis by model compounds found in lignocellulosic hydrolysates

(2013) Mary Ann Franden et al.   Biotechnology for Biofuels

Ethanol fermentation of sugarcane molasses by Zymomonas mobilis MTCC 92 immobilized in Luffa cylindrica L. sponge discs and Ca-alginate matrices

(2013) Shuvashish Behera et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Levan production by Zymomonas mobilis in batch and continuous fermentation systems

(2013) Selim Silbir et al.   CARBOHYDRATE POLYMERS

Biotechnological potential of respiring Zymomonas mobilis: A stoichiometric analysis of its central metabolism

(2013) Agris Pentjuss et al.   JOURNAL OF BIOTECHNOLOGY

Use of an EZ-Tn5-based random mutagenesis system to create a Zymomonas mobilis with significant tolerance to heat stress and malnutrition

(2013) Xianghui Jia et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Use of a Tn5-based transposon system to create a cost-effective Zymomonas mobilis for ethanol production from lignocelluloses

(2013) Xi Zhang et al.   Microbial Cell Factories

Kinetic modelling of the Zymomonas mobilis Entner-Doudoroff pathway: insights into control and functionality

(2013) R. Rutkis et al.   MICROBIOLOGY-SGM

Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates

(2013) J. M. Skerker et al.   Molecular Systems Biology

Systems Biology Analysis of Zymomonas mobilis ZM4 Ethanol Stress Responses

(2013) Shihui Yang et al.   PLoS One

“Fish-in-Net”, a Novel Method for Cell Immobilization of Zymomonas mobilis

(2013) Xuedun Niu et al.   PLoS One

BIOETHANOL PRODUCTION FROM LEAFY BIOMASS OF MANGO (Mangifera indica) INVOLVING NATURALLY ISOLATED AND RECOMBINANT ENZYMES

(2013) Saprativ P. Das et al.   PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY

EVALUATION OF BIOETHANOL PRODUCTION FROM CAROB PODS BYZymomonas mobilisANDSaccharomyces cerevisiaeIN SOLID SUBMERGED FERMENTATION

(2013) Saeed Saharkhiz et al.   PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY

Lignocellulosic biomass to bioethanol, a comprehensive review with a focus on pretreatment

(2013) Sohrab Haghighi Mood et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Respiratory Chain Analysis of Zymomonas mobilis Mutants Producing High Levels of Ethanol

(2012) Takeshi Hayashi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ethanol production from wood hydrolysate using genetically engineered Zymomonas mobilis

(2012) Hideshi Yanase et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcriptome profiling of Zymomonas mobilis under furfural stress

(2012) Ming-xiong He et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genome-wide transcriptomic analysis of a flocculent strain of Zymomonas mobilis

(2012) Young Jae Jeon et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Starch saccharification and fermentation of uncooked sweet potato roots for fuel ethanol production

(2012) Peng Zhang et al.   BIORESOURCE TECHNOLOGY

Transcriptome profiling of Zymomonas mobilis under ethanol stress

(2012) Ming-xiong He et al.   Biotechnology for Biofuels

Comparison of glucose/xylose co-fermentation by recombinant Zymomonas mobilis under different genetic and environmental conditions

(2012) Yuanyuan Ma et al.   BIOTECHNOLOGY LETTERS

Well-to-wheels energy use and greenhouse gas emissions of ethanol from corn, sugarcane and cellulosic biomass for US use

(2012) Michael Wang et al.   Environmental Research Letters

Complete Genome Sequence of the Ethanol-Producing Zymomonas mobilis subsp. mobilis Centrotype ATCC 29191

(2012) A. Desiniotis et al.   JOURNAL OF BACTERIOLOGY

Draft Genome Sequence of the Flocculating Zymomonas mobilis Strain ZM401 (ATCC 31822)

(2012) N. Zhao et al.   JOURNAL OF BACTERIOLOGY

Heterologous Expression of Plant Cell Wall Degrading Enzymes for Effective Production of Cellulosic Biofuels

(2012) Sang-Kyu Jung et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

An automated workflow for enhancing microbial bioprocess optimization on a novel microbioreactor platform

(2012) Peter Rohe et al.   Microbial Cell Factories

Optimization of process parameters for ethanol production from sugar cane molasses by Zymomonas mobilis using response surface methodology and genetic algorithm

(2011) Bodhisatta Maiti et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Design and construction of improved new vectors for Zymomonas mobilis recombinants

(2011) Hong-Wei Dong et al.   BIOTECHNOLOGY AND BIOENGINEERING

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Recent progress in consolidated bioprocessing

(2011) Daniel G Olson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genome Sequence of the Ethanol-Producing Zymomonas mobilis subsp. mobilis Lectotype Strain ATCC 10988

(2011) K. M. Pappas et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of the Ethanol-Producing Zymomonas mobilis subsp. pomaceae Lectotype Strain ATCC 29192

(2011) V. N. Kouvelis et al.   JOURNAL OF BACTERIOLOGY

An evolutionary strategy for isobutanol production strain development in Escherichia coli

(2011) Kevin M. Smith et al.   METABOLIC ENGINEERING

Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum

(2011) S. D. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and microbial production of a terpene-based advanced biofuel

(2011) Pamela P. Peralta-Yahya et al.   Nature Communications

Heterologous Expression and Extracellular Secretion of Cellulolytic Enzymes by Zymomonas mobilis

(2010) J. G. Linger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA restriction-modification systems in the ethanologen, Zymomonas mobilis ZM4

(2010) Aidan L. Kerr et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Engineering Corynebacterium glutamicum for isobutanol production

(2010) Kevin Michael Smith et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Cellulosic ethanol production by Zymomonas mobilis harboring an endoglucanase gene from Enterobacter cloacae

(2010) P. Thirumalai Vasan et al.   BIORESOURCE TECHNOLOGY

Evaluating the impact of ammonia fiber expansion (AFEX) pretreatment conditions on the cost of ethanol production

(2010) Bryan Bals et al.   BIORESOURCE TECHNOLOGY

Ethanol production from paper sludge by simultaneous saccharification and co-fermentation using recombinant xylose-fermenting microorganisms

(2010) Jiayi Zhang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Adaptation yields a highly efficient xylose-fermenting Zymomonas mobilis strain

(2010) Manoj Agrawal et al.   BIOTECHNOLOGY AND BIOENGINEERING

Microfluidic biolector-microfluidic bioprocess control in microtiter plates

(2010) Matthias Funke et al.   BIOTECHNOLOGY AND BIOENGINEERING

Genome-scale modeling and in silico analysis of ethanologenic bacteria Zymomonas mobilis

(2010) Hanifah Widiastuti et al.   BIOTECHNOLOGY AND BIOENGINEERING

Advanced biofuel production in microbes

(2010) Pamela P. Peralta-Yahya et al.   Biotechnology Journal

The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors

(2010) Shihui Yang et al.   BMC MICROBIOLOGY

Measuring growth rate in high-throughput growth phenotyping

(2010) Anders Blomberg   CURRENT OPINION IN BIOTECHNOLOGY

Toward design-based engineering of industrial microbes

(2010) Keith EJ Tyo et al.   CURRENT OPINION IN MICROBIOLOGY

Construction and optimization of synthetic pathways in metabolic engineering

(2010) Dokyun Na et al.   CURRENT OPINION IN MICROBIOLOGY

Sorbitol production using recombinant Zymomonas mobilis strain

(2010) Changjun Liu et al.   JOURNAL OF BIOTECHNOLOGY

Bioprocess Control in Microscale: Scalable Fermentations in Disposable and User-Friendly Microfluidic Systems

(2010) Matthias Funke et al.   Microbial Cell Factories

The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies

(2010) Kyung Lee et al.   Microbial Cell Factories

Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae

(2010) S. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enabling Unbalanced Fermentations by Using Engineered Electrode-Interfaced Bacteria

(2010) J. M. Flynn et al.   mBio

Acetolactate Synthase from Bacillus subtilis Serves as a 2-Ketoisovalerate Decarboxylase for Isobutanol Biosynthesis in Escherichia coli

(2009) S. Atsumi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ethanol Production from Sugarcane Bagasse by Zymomonas mobilis Using Simultaneous Saccharification and Fermentation (SSF) Process

(2009) Danielle da Silveira dos Santos et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Phenotype MicroArray Profiling of Zymomonas mobilis ZM4

(2009) Barry Bochner et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Engineering the isobutanol biosynthetic pathway in Escherichia coli by comparison of three aldehyde reductase/alcohol dehydrogenase genes

(2009) Shota Atsumi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Optimization of metabolic pathways for bioconversion of lignocellulose to ethanol through genetic engineering

(2009) Jienan Chen et al.   BIOTECHNOLOGY ADVANCES

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

(2009) Shihui Yang et al.   BMC GENOMICS

Flux balance analysis of biological systems: applications and challenges

(2009) K. Raman et al.   BRIEFINGS IN BIOINFORMATICS

Potential impact of synthetic biology on the development of microbial systems for the production of renewable fuels and chemicals

(2009) Stephen Picataggio   CURRENT OPINION IN BIOTECHNOLOGY

Microbial production of advanced transportation fuels in non-natural hosts

(2009) Michael R Connor et al.   CURRENT OPINION IN BIOTECHNOLOGY

Methods for Pretreatment of Lignocellulosic Biomass for Efficient Hydrolysis and Biofuel Production

(2009) Parveen Kumar et al.   INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH

Complete Genome Sequence of the Ethanol Producer Zymomonas mobilis NCIMB 11163

(2009) V. N. Kouvelis et al.   JOURNAL OF BACTERIOLOGY

Toward Engineering Synthetic Microbial Metabolism

(2009) George H. McArthur et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Development of a high-throughput method to evaluate the impact of inhibitory compounds from lignocellulosic hydrolysates on the growth of Zymomonas mobilis

(2009) Mary Ann Franden et al.   JOURNAL OF BIOTECHNOLOGY

Improved genome annotation for Zymomonas mobilis

(2009) Shihui Yang et al.   NATURE BIOTECHNOLOGY

Engineering for biofuels: exploiting innate microbial capacity or importing biosynthetic potential?

(2009) Hal Alper et al.   NATURE REVIEWS MICROBIOLOGY

Micro-bioreactors for fed-batch fermentations with integrated online monitoring and microfluidic devices

(2008) A. Buchenauer et al.   BIOSENSORS & BIOELECTRONICS

Strategies for systems-level metabolic engineering

(2008) Tae Yong Kim et al.   Biotechnology Journal

Functional characterization of a putative endoglucanase gene in the genome of Zymomonas mobilis

(2008) K. N. Rajnish et al.   BIOTECHNOLOGY LETTERS

De novo biosynthetic pathways: rational design of microbial chemical factories

(2008) Kristala L Jones Prather et al.   CURRENT OPINION IN BIOTECHNOLOGY

Metabolic Control Analysis: A Tool for Designing Strategies to Manipulate Metabolic Pathways

(2008) Rafael Moreno-Sánchez et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels

(2008) Shota Atsumi et al.   NATURE

The utilization of acid-tolerant bacteria on ethanol production from kitchen garbage

(2008) Hongzhi Ma et al.   RENEWABLE ENERGY

Application of systems biology for bioprocess development

(2008) Jin Hwan Park et al.   TRENDS IN BIOTECHNOLOGY