Rice grain nutritional traits and their enhancement using relevant genes and QTLs through advanced approaches

The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication

(2016) Hongru Wang et al.   Molecular Plant

OsSPL13 controls grain size in cultivated rice

(2016) Lizhen Si et al.   NATURE GENETICS

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

(2016) Kenji Yano et al.   NATURE GENETICS

Next generation breeding

(2016) Delfina Barabaschi et al.   PLANT SCIENCE

The Nipponbare genome and the next-generation of rice genomics research in Japan

(2016) Takashi Matsumoto et al.   Rice

Open access resources for genome-wide association mapping in rice

(2016) Susan R. McCouch et al.   Nature Communications

Genome-wide generation and use of informative intron-spanning and intron-length polymorphism markers for high-throughput genetic analysis in rice

(2016) Saurabh Badoni et al.   Scientific Reports

An Integrated Genomic Strategy Delineates Candidate Mediator Genes Regulating Grain Size and Weight in Rice

(2016) Naveen Malik et al.   Scientific Reports

Genetic Diversity and Elite Allele Mining for Grain Traits in Rice (Oryza sativa L.) by Association Mapping

(2016) Wisdom M. Edzesi et al.   Frontiers in Plant Science

Integrated metabolomics and phytochemical genomics approaches for studies on rice

(2016) Yozo Okazaki et al.   GigaScience

Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions

(2016) Filippo Biscarini et al.   PLoS One

Deep sequencing transcriptional fingerprinting of rice kernels for dissecting grain quality traits

(2015) Chiara Biselli et al.   BMC GENOMICS

Nutritional quality of rice bran protein in comparison to animal and vegetable protein

(2015) Sung-Wook Han et al.   FOOD CHEMISTRY

Whole-genome resequencing: changing the paradigms of SNP detection, molecular mapping and gene discovery

(2015) Xiangyang Xu et al.   MOLECULAR BREEDING

Genetic analysis for rice grain quality traits in the YVB stable variant line using RAD-seq

(2015) Yan Peng et al.   MOLECULAR GENETICS AND GENOMICS

Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice

(2015) Nisha Singh et al.   Scientific Reports

Correction: Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines

(2015) Jennifer Spindel et al.   PLoS Genetics

Dynamic Analysis of Gene Expression in Rice Superior and Inferior Grains by RNA-Seq

(2015) Hongzheng Sun et al.   PLoS One

Identification of putative candidate gene markers for grain zinc content using recombinant inbred lines (RIL) population of IRRI38 X Jeerigesanna

(2014) Kumar Gande Naveen et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Comparative mapping of chalkiness components in rice using five populations across two environments

(2014) Bo Peng et al.   BMC GENETICS

Combating Mineral Malnutrition through Iron and Zinc Biofortification of Cereals

(2014) Zaigham Shahzad et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Development of an Iron-enriched High-yieldings Indica Rice Cultivar by Introgression of A High-iron Trait from Transgenic Iron-biofortified Rice

(2014) Soumitra Paul et al.   PLANT FOODS FOR HUMAN NUTRITION

Genome Wide Association Mapping of Grain Arsenic, Copper, Molybdenum and Zinc in Rice (Oryza sativa L.) Grown at Four International Field Sites

(2014) Gareth J. Norton et al.   PLoS One

Application of resequencing to rice genomics, functional genomics and evolutionary analysis

(2014) Longbiao Guo et al.   Rice

Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding

(2014) Rajeev K. Varshney et al.   PLOS BIOLOGY

Analysis of QTLs Associated with the Rice Quality Related Gene by Double Haploid Populations

(2014) Gyu-Ho Lee et al.   International Journal of Genomics

The 3,000 rice genomes project: new opportunities and challenges for future rice research

(2014) Jia-Yang Li et al.   GigaScience

Rice antioxidants: phenolic acids, flavonoids, anthocyanins, proanthocyanidins, tocopherols, tocotrienols,γ-oryzanol, and phytic acid

(2014) Piebiep Goufo et al.   Food Science & Nutrition

Genomics-based precision breeding approaches to improve drought tolerance in rice

(2013) B.P. Mallikarjuna Swamy et al.   BIOTECHNOLOGY ADVANCES

Development of genomics-based genotyping platforms and their applications in rice breeding

(2013) Haodong Chen et al.   CURRENT OPINION IN PLANT BIOLOGY

Sequencing-based genome-wide association study in rice

(2013) Bin Han et al.   CURRENT OPINION IN PLANT BIOLOGY

Obesity, the Metabolic Syndrome, and Type 2 Diabetes in Developing Countries: Role of Dietary Fats and Oils

(2013) Anoop Misra et al.   JOURNAL OF THE AMERICAN COLLEGE OF NUTRITION

ERISdb: A Database of Plant Splice Sites and Splicing Signals

(2013) Michał Wojciech Szcześniak et al.   PLANT AND CELL PHYSIOLOGY

A whole-genome SNP array (RICE6K) for genomic breeding in rice

(2013) Huihui Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

RNA-Seq of Arabidopsis Pollen Uncovers Novel Transcription and Alternative Splicing

(2013) A. E. Loraine et al.   PLANT PHYSIOLOGY

Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences

(2013) Z.-Y. Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain

(2013) Min Zhang et al.   THEORETICAL AND APPLIED GENETICS

Iron-biofortification in rice by the introduction of three barley genes participated in mugineic acid biosynthesis with soybean ferritin gene

(2013) Hiroshi Masuda et al.   Frontiers in Plant Science

The road to micronutrient biofortification of rice: progress and prospects

(2013) Khurram Bashir et al.   Frontiers in Plant Science

QTL Mapping for Grain Size Traits Based on Extra-Large Grain Rice Line TD70

(2013) Ya-dong ZHANG et al.   Rice Science

Iron Uptake, Translocation, and Regulation in Higher Plants

(2012) Takanori Kobayashi et al.   Annual Review of Plant Biology

Application of Genomic Tools in Plant Breeding

(2012) A. M. Perez-de-Castro et al.   CURRENT GENOMICS

Mapping QTLs and candidate genes for iron and zinc concentrations in unpolished rice of Madhukar×Swarna RILs

(2012) K. Anuradha et al.   GENE

Simple and Rapid Molecular Techniques for Identification of Amylose Levels in Rice Varieties

(2012) Acga Cheng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Iron homeostasis and fortification in rice

(2012) Sichul Lee et al.   JOURNAL OF PLANT BIOLOGY

Molecular mechanisms of zinc uptake and translocation in rice

(2012) Khurram Bashir et al.   PLANT AND SOIL

Estimating the Global Prevalence of Zinc Deficiency: Results Based on Zinc Availability in National Food Supplies and the Prevalence of Stunting

(2012) K. Ryan Wessells et al.   PLoS One

SNP in starch biosynthesis genes associated with nutritional and functional properties of rice

(2012) Ardashir Kharabian-Masouleh et al.   Scientific Reports

Molecular breeding of Osfer2 gene to increase iron nutrition in rice grain

(2012) Soumitra Paul et al.   GM Crops & Food-Biotechnology in Agriculture and the Food Chain

Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars

(2011) R C Venu et al.   BMC GENOMICS

Genotypic Variation and Relationships between Quality Traits and Trace Elements in Traditional and Improved Rice (Oryza sativa L.) Genotypes

(2011) A. Anandan et al.   JOURNAL OF FOOD SCIENCE

Identification of EMS-Induced Causal Mutations in a Non-Reference Arabidopsis thaliana Accession by Whole Genome Sequencing

(2011) N. Uchida et al.   PLANT AND CELL PHYSIOLOGY

Molecular Spectrum of Somaclonal Variation in Regenerated Rice Revealed by Whole-Genome Sequencing

(2011) Akio Miyao et al.   PLANT AND CELL PHYSIOLOGY

Bio-available zinc in rice seeds is increased by activation tagging of nicotianamine synthase

(2011) Sichul Lee et al.   PLANT BIOTECHNOLOGY JOURNAL

OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil

(2011) Yuko Ogo et al.   PLANT MOLECULAR BIOLOGY

Constitutive Overexpression of the OsNAS Gene Family Reveals Single-Gene Strategies for Effective Iron- and Zinc-Biofortification of Rice Endosperm

(2011) Alexander A. T. Johnson et al.   PLoS One

Identification of a Major Genetic Determinant of Glycaemic Index in Rice

(2011) M. A. Fitzgerald et al.   Rice

Zn Uptake and Translocation in Rice Plants

(2011) Yasuhiro Ishimaru et al.   Rice

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Identification of QTL Affecting Protein and Amino Acid Contents in Rice

(2011) Ming ZHONG et al.   Rice Science

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Genomics and Bioinformatics Resources for Crop Improvement

(2010) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese

(2010) Yasuhiro Ishimaru et al.   PLANT JOURNAL

OsZIP5 is a plasma membrane zinc transporter in rice

(2010) Sichul Lee et al.   PLANT MOLECULAR BIOLOGY

Nicotianamine, a Novel Enhancer of Rice Iron Bioavailability to Humans

(2010) Luqing Zheng et al.   PLoS One

Transgenic rice lines that include barley genes have increased tolerance to low iron availability in a calcareous paddy soil

(2010) Motofumi Suzuki et al.   SOIL SCIENCE AND PLANT NUTRITION

Association mapping of grain color, phenolic content, flavonoid content and antioxidant capacity in dehulled rice

(2010) Yafang Shao et al.   THEORETICAL AND APPLIED GENETICS

Influence of Cooking on Anthocyanins in Black Rice (Oryza sativaL.japonicavar. SBR)

(2009) Miki Hiemori et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

QTL mapping of grain quality traits in rice

(2009) Jue Lou et al.   JOURNAL OF CEREAL SCIENCE

Genetic relationship between grain yield and the contents of protein and fat in a recombinant inbred population of rice

(2009) Yong-Hong Yu et al.   JOURNAL OF CEREAL SCIENCE

Quantitative trait loci controlling Cu, Ca, Zn, Mn and Fe content in rice grains

(2009) Kaiyang Lu et al.   JOURNAL OF GENETICS

Genetic mapping of the rice ionome in leaves and grain: identification of QTLs for 17 elements including arsenic, cadmium, iron and selenium

(2009) Gareth J. Norton et al.   PLANT AND SOIL

Rice endosperm iron biofortification by targeted and synergistic action of nicotianamine synthase and ferritin

(2009) Judith Wirth et al.   PLANT BIOTECHNOLOGY JOURNAL

Rice caryopsis structure in relation to distribution of micronutrients (iron, zinc, β-carotene) of rice cultivars including transgenic indica rice

(2009) Krishnan Sellappan et al.   PLANT SCIENCE

Approaches and challenges to engineering seed phytate and total phosphorus

(2009) Victor Raboy   PLANT SCIENCE

Iron fortification of rice seeds through activation of the nicotianamine synthase gene

(2009) S. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overexpression of the Barley Nicotianamine Synthase Gene HvNAS1 Increases Iron and Zinc Concentrations in Rice Grains

(2009) Hiroshi Masuda et al.   Rice

Glycemic index, postprandial glycemia, and the shape of the curve in healthy subjects: analysis of a database of more than 1000 foods

(2008) Jennie C Brand-Miller et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

(2008) Jianfeng Weng et al.   CELL RESEARCH

Mapping QTLs for milling yield and grain characteristics in a tropical japonica long grain cross

(2008) J.L. Kepiro et al.   JOURNAL OF CEREAL SCIENCE

QTL mapping for crude protein and protein fraction contents in rice (Oryza sativa L.)

(2008) Wenwei Zhang et al.   JOURNAL OF CEREAL SCIENCE

Waxy gene haplotypes: Associations with pasting properties in an international rice germplasm collection

(2008) Ming-Hsuan Chen et al.   JOURNAL OF CEREAL SCIENCE

Total phenolics, flavonoids, antioxidant capacity in rice grain and their relations to grain color, size and weight

(2008) Yun Shen et al.   JOURNAL OF CEREAL SCIENCE

Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm

(2008) Taiji Kawakatsu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic Identification of Quantitative Trait Loci for Contents of Mineral Nutrients in Rice Grain

(2008) Ana Luisa Garcia-Oliveira et al.   Journal of Integrative Plant Biology

Phytate: impact on environment and human nutrition. A challenge for molecular breeding

(2008) Lisbeth Bohn et al.   Journal of Zhejiang University-SCIENCE B

Deletion in a gene associated with grain size increased yields during rice domestication

(2008) Ayahiko Shomura et al.   NATURE GENETICS

Transporters of arsenite in rice and their role in arsenic accumulation in rice grain

(2008) J. F. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g

(2008) Steven A. Brooks et al.   THEORETICAL AND APPLIED GENETICS

Increase in Iron and Zinc Concentrations in Rice Grains Via the Introduction of Barley Genes Involved in Phytosiderophore Synthesis

(2008) Hiroshi Masuda et al.   Rice

Waxy gene haplotypes: Associations with apparent amylose content and the effect by the environment in an international rice germplasm collection

(2007) Ming-Hsuan Chen et al.   JOURNAL OF CEREAL SCIENCE