Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions

Open access resources for genome-wide association mapping in rice

(2016) Susan R. McCouch et al.   Nature Communications

Comparison of Effect of Brassinosteroid and Gibberellin Biosynthesis Inhibitors on Growth of Rice Seedlings

(2016) Tadashi Matusmoto et al.   Rice Science

Deep sequencing transcriptional fingerprinting of rice kernels for dissecting grain quality traits

(2015) Chiara Biselli et al.   BMC GENOMICS

Genome-Wide Association Mapping for Yield and Other Agronomic Traits in an Elite Breeding Population of Tropical Rice (Oryza sativa)

(2015) Hasina Begum et al.   PLoS One

Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division

(2015) Dan Jiang et al.   PLoS One

Molecular Genetic Dissection of Quantitative Trait Loci Regulating Rice Grain Size

(2014) Jianru Zuo et al.   Annual Review of Genetics

Linkage disequilibrium levels in Bos indicus and Bos taurus cattle using medium and high density SNP chip data and different minor allele frequency distributions

(2014) Ana M. Pérez O’Brien et al.   Livestock Science

Quantitative Trait Locus Mapping and Candidate Gene Analysis for Plant Architecture Traits Using Whole Genome Re-Sequencing in Rice

(2014) Jung-Hyun Lim et al.   MOLECULES AND CELLS

Loss of Function of the Cytochrome P450 Gene CYP78B5 Causes Giant Embryos in Rice

(2014) Yilin Chen et al.   PLANT MOLECULAR BIOLOGY REPORTER

Improving the Accuracy of Whole Genome Prediction for Complex Traits Using the Results of Genome Wide Association Studies

(2014) Zhe Zhang et al.   PLoS One

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Using Genotyping-By-Sequencing (GBS) for Genomic Discovery in Cultivated Oat

(2014) Yung-Fen Huang et al.   PLoS One

The roots of future rice harvests

(2014) Nourollah Ahmadi et al.   Rice

Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.)

(2013) CHUNHUA YANG et al.   PLANT CELL AND ENVIRONMENT

GIANTEMBRYOencodes CYP78A13, required for proper size balance between embryo and endosperm in rice

(2013) Nobuhiro Nagasawa et al.   PLANT JOURNAL

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Dominance and epistasis are the main contributors to heterosis for plant height in rice

(2013) Guojing Shen et al.   PLANT SCIENCE

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

Genome-Wide Association Mapping of Root Traits in a Japonica Rice Panel

(2013) Brigitte Courtois et al.   PLoS One

Root traits contributing to plant productivity under drought

(2013) Louise H. Comas et al.   Frontiers in Plant Science

Genetic Diversity and Population Structure in a European Collection of Rice

(2012) Brigitte Courtois et al.   CROP SCIENCE

The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency

(2012) Rico Gamuyao et al.   NATURE

Genetic bases of rice grain shape: so many genes, so little known

(2012) Rongyu Huang et al.   TRENDS IN PLANT SCIENCE

Crops that feed the world 7: Rice

(2012) Papa Abdoulaye Seck et al.   Food Security

Mapping and Comparative Analysis of QTL for Rice Plant Height Based on Different Sample Sizes within a Single Line in RIL Population

(2012) Yong-shu LIANG et al.   Rice Science

Drought Resistance Improvement in Rice: An Integrated Genetic and Resource Management Strategy

(2011) Rachid Serraj et al.   PLANT PRODUCTION SCIENCE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

An approach for precision farming under pivot irrigation system using remote sensing and GIS techniques

(2010) A.H. El Nahry et al.   AGRICULTURAL WATER MANAGEMENT

Genetic and Molecular Bases of Rice Yield

(2010) Yongzhong Xing et al.   Annual Review of Plant Biology

Characteristics of linkage disequilibrium in North American Holsteins

(2010) Jarmila Bohmanova et al.   BMC GENOMICS

Assessment of genetic diversity in Italian rice germplasm related to agronomic traits and blast resistance (Magnaporthe oryzae)

(2010) Odile Faivre-Rampant et al.   MOLECULAR BREEDING

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

OsSPL14 promotes panicle branching and higher grain productivity in rice

(2010) Kotaro Miura et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Population Structure and Cryptic Relatedness in Genetic Association Studies

(2010) William Astle et al.   STATISTICAL SCIENCE

Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines

(2010) Lu Wang et al.   THEORETICAL AND APPLIED GENETICS

Rice histone deacetylase genes display specific expression patterns and developmental functions

(2009) Yongfeng Hu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice

(2009) Pil Joong Chung et al.   PLANT JOURNAL

Not just a grain of rice: the quest for quality

(2009) Melissa A. Fitzgerald et al.   TRENDS IN PLANT SCIENCE

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel

(2008) Mehar S Khatkar et al.   BMC GENOMICS

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

(2008) Jianfeng Weng et al.   CELL RESEARCH

Deletion in a gene associated with grain size increased yields during rice domestication

(2008) Ayahiko Shomura et al.   NATURE GENETICS

Mathematical properties of the measure of linkage disequilibrium

(2008) Jenna M. VanLiere et al.   THEORETICAL POPULATION BIOLOGY