Marine invasions enter the genomic era: three lessons from the past, and the way forward

Active and passive environmental DNA surveillance of aquatic invasive species

(2016) Megan Simmons et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

The Size Advantage Model of Sex Allocation in the Protandrous Sex-Changer Crepidula fornicata: Role of the Mating System, Sperm Storage, and Male Mobility

(2015) Thomas Broquet et al.   AMERICAN NATURALIST

DNA (meta)barcoding of biological invasions: a powerful tool to elucidate invasion processes and help managing aliens

(2015) Thierry Comtet et al.   BIOLOGICAL INVASIONS

Additive transcriptomic variation associated with reproductive traits suggest local adaptation in a recently settled population of the Pacific oyster, Crassostrea gigas

(2015) Rossana Sussarellu et al.   BMC GENOMICS

Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

(2015) Pierre-Alexandre Gagnaire et al.   Evolutionary Applications

Morphological evidence that the molecularly determinedCiona intestinalistype A and type B are different species:Ciona robustaandCiona intestinalis

(2015) Riccardo Brunetti et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Evolutionary patterns in Antarctic marine invertebrates: An update on molecular studies

(2015) Ana Riesgo et al.   Marine Genomics

Metabarcoding approach for the ballast water surveillance – An advantageous solution or an awkward challenge?

(2015) Anastasija Zaiko et al.   MARINE POLLUTION BULLETIN

Metabarcoding approach for nonindigenous species surveillance in marine coastal waters

(2015) Anastasija Zaiko et al.   MARINE POLLUTION BULLETIN

Causes and consequences of failed adaptation to biological invasions: the role of ecological constraints

(2015) Jennifer A. Lau et al.   MOLECULAR ECOLOGY

Species are hypotheses: avoid connectivity assessments based on pillars of sand

(2015) Eric Pante et al.   MOLECULAR ECOLOGY

Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels

(2015) Christelle Fraïsse et al.   MOLECULAR ECOLOGY

The devil is in the details: genetic variation in introduced populations and its contributions to invasion

(2015) Katrina M. Dlugosch et al.   MOLECULAR ECOLOGY

Introgression between invasive and native blue mussels (genusMytilus) in the central California hybrid zone

(2015) Norah P. Saarman et al.   MOLECULAR ECOLOGY

Transcriptome sequencing reveals both neutral and adaptive genome dynamics in a marine invader

(2015) C. K. Tepolt et al.   MOLECULAR ECOLOGY

What we still don't know about invasion genetics

(2015) Dan G. Bock et al.   MOLECULAR ECOLOGY

Expansion load: recessive mutations and the role of standing genetic variation

(2015) Stephan Peischl et al.   MOLECULAR ECOLOGY

Contemporary evolution during invasion: evidence for differentiation, natural selection, and local adaptation

(2015) Robert I. Colautti et al.   MOLECULAR ECOLOGY

RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus)

(2015) Laura Benestan et al.   MOLECULAR ECOLOGY

Potential for DNA-based identification of Great Lakes fauna: match and mismatch between taxa inventories and DNA barcode libraries

(2015) Anett S. Trebitz et al.   Scientific Reports

Cryptic species obscure introduction pathway of the blue Caribbean sponge (Haliclona(Soestella)caerulea), (order: Haplosclerida) to Palmyra Atoll, Central Pacific

(2015) Ingrid S. Knapp et al.   PeerJ

The Application of DNA Barcodes for the Identification of Marine Crustaceans from the North Sea and Adjacent Regions

(2015) Michael J. Raupach et al.   PLoS One

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Adaptation in marine invasion: a genetic perspective

(2014) C. K. Tepolt   BIOLOGICAL INVASIONS

Marine invasion genetics: from spatio-temporal patterns to evolutionary outcomes

(2014) Marc Rius et al.   BIOLOGICAL INVASIONS

The distribution of deleterious genetic variation in human populations

(2014) Kirk E Lohmueller   CURRENT OPINION IN GENETICS & DEVELOPMENT

Evolutionary responses to global change: lessons from invasive species

(2014) Emily V. Moran et al.   ECOLOGY LETTERS

Gene-Flow in a Mosaic Hybrid Zone: Is Local Introgression Adaptive?

(2014) C. Fraisse et al.   GENETICS

Use of RAD sequencing for delimiting species

(2014) E Pante et al.   HEREDITY

Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in aMytilushybrid zone

(2014) C. Roux et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Recent admixture generates heterozygosity-fitness correlations during the range expansion of an invading species

(2014) S. R. Keller et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Testing for Hardy–Weinberg Proportions: Have We Lost the Plot?

(2014) Robin S. Waples   JOURNAL OF HEREDITY

Hybridization, Introgression, and the Nature of Species Boundaries

(2014) Richard G. Harrison et al.   JOURNAL OF HEREDITY

Rare Variation Facilitates Inferences of Fine-Scale Population Structure in Humans

(2014) Timothy D. O’Connor et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Environmental Status Assessment Using DNA Metabarcoding: Towards a Genetics Based Marine Biotic Index (gAMBI)

(2014) Eva Aylagas et al.   PLoS One

Using Environmental DNA to Census Marine Fishes in a Large Mesocosm

(2014) Ryan P. Kelly et al.   PLoS One

Influence of Artifact Removal on Rare Species Recovery in Natural Complex Communities Using High-Throughput Sequencing

(2014) Aibin Zhan et al.   PLoS One

From Integrative Taxonomy to Species Description: One Step Beyond

(2014) E. Pante et al.   SYSTEMATIC BIOLOGY

How important is intraspecific genetic admixture to the success of colonising populations?

(2014) Marc Rius et al.   TRENDS IN ECOLOGY & EVOLUTION

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity

(2014) Melania E. Cristescu   TRENDS IN ECOLOGY & EVOLUTION

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

(2013) Paul A. Hohenlohe et al.   MOLECULAR ECOLOGY

Contrasting patterns of genome-wide polymorphism in the native and invasive range of the marine molluscCrepidula fornicata

(2013) Florentine Riquet et al.   MOLECULAR ECOLOGY

On the accumulation of deleterious mutations during range expansions

(2013) S. Peischl et al.   MOLECULAR ECOLOGY

Invading European Seas: Assessing pathways of introduction of marine aliens

(2013) Stelios Katsanevakis et al.   OCEAN & COASTAL MANAGEMENT

Evaluating Detection Limits of Next-Generation Sequencing for the Surveillance and Monitoring of International Marine Pests

(2013) Xavier Pochon et al.   PLoS One

Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

(2013) Penelope K. Lindeque et al.   PLoS One

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

(2013) Aibin Zhan et al.   Methods in Ecology and Evolution

Global imprint of climate change on marine life

(2013) Elvira S. Poloczanska et al.   Nature Climate Change

The Magnitude of Global Marine Species Diversity

(2012) Ward Appeltans et al.   CURRENT BIOLOGY

Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)

(2012) J Ferreira de Carvalho et al.   HEREDITY

Differential introgression from a sister species explains highFSToutlier loci within a mussel species

(2012) C. C. Gosset et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Rapid evolution of body fluid regulation following independent invasions into freshwater habitats

(2012) CAROL EUNMI LEE et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The genetic differentiation at quantitative trait loci under local adaptation

(2012) VALÉRIE LE CORRE et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

(2012) Einar E. Nielsen et al.   Nature Communications

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

Assessing invasion risk across taxa and habitats: life stage as a determinant of invasion success

(2011) Elizabeta Briski et al.   DIVERSITY AND DISTRIBUTIONS

PUMPING IONS: RAPID PARALLEL EVOLUTION OF IONIC REGULATION FOLLOWING HABITAT INVASIONS

(2011) Carol Eunmi Lee et al.   EVOLUTION

Marine connectivity: a new look at pelagic larval duration and genetic metrics of dispersal

(2011) KA Selkoe et al.   MARINE ECOLOGY PROGRESS SERIES

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths

(2011) John Wilson et al.   BMC ECOLOGY

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

(2010) S. CREER et al.   MOLECULAR ECOLOGY

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Assessing Macroinvertebrate Biodiversity in Freshwater Ecosystems: Advances and Challenges in DNA-based Approaches

(2010) Michael E. Pfrender et al.   QUARTERLY REVIEW OF BIOLOGY

The Role of Propagule Pressure in Biological Invasions

(2009) Daniel Simberloff   Annual Review of Ecology Evolution and Systematics

Genetic Perspectives on Marine Biological Invasions

(2009) Jonathan B. Geller et al.   Annual Review of Marine Science

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Population genetics, larval dispersal, and connectivity in marine systems

(2009) K Weersing et al.   MARINE ECOLOGY PROGRESS SERIES

High Genetic Variance in Life-History Strategies within Invasive Populations by Way of Multiple Introductions

(2008) Benoît Facon et al.   CURRENT BIOLOGY

Assessing the global threat of invasive species to marine biodiversity

(2008) Jennifer L Molnar et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Synergies among extinction drivers under global change

(2008) B BROOK et al.   TRENDS IN ECOLOGY & EVOLUTION

Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions

(2007) K. M. DLUGOSCH et al.   MOLECULAR ECOLOGY

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION