Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

Genome-wide Association Study Identifies Candidate Genes for Male Fertility Traits in Humans

(2012) Gülüm Kosova et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Identification and expression of Smads associated with TGF-β/activin/nodal signaling pathways in the rainbow trout (Oncorhynchus mykiss)

(2012) Scott A. Gahr et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Dynamics of introgressive hybridization assessed by SNP population genomics of coding genes in stocked brook charr (Salvelinus fontinalis)

(2012) FABIEN C. LAMAZE et al.   MOLECULAR ECOLOGY

Genomic consequences of genetic rescue in an insular population of bighorn sheep (Ovis canadensis)

(2012) J. M. MILLER et al.   MOLECULAR ECOLOGY

Discovery and characterization of a large number of diagnostic markers to discriminate Oncorhynchus mykiss and O. clarkii

(2012) V. L. PRITCHARD et al.   Molecular Ecology Resources

Development and evaluation of 200 novel SNP assays for population genetic studies of westslope cutthroat trout and genetic identification of related taxa

(2012) N. R. CAMPBELL et al.   Molecular Ecology Resources

RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays

(2012) STEPHEN J. AMISH et al.   Molecular Ecology Resources

Paired-end RAD-seq for de novo assembly and marker design without available reference

(2011) Eva-Maria Willing et al.   BIOINFORMATICS

Invasive species as drivers of evolutionary change: cane toads in tropical Australia

(2011) Richard Shine   Evolutionary Applications

Genomic toolboxes for conservation biologists

(2011) Francesco Angeloni et al.   Evolutionary Applications

A Hierarchical Bayesian Model for Next-Generation Population Genomics

(2011) Z. Gompert et al.   GENETICS

Next-generation hybridization and introgression

(2011) A D Twyford et al.   HEREDITY

The n = 1 constraint in population genomics

(2011) C. A. BUERKLE et al.   MOLECULAR ECOLOGY

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Single nucleotide polymorphisms across a species’ range: implications for conservation studies of Pacific salmon

(2011) L. W. SEEB et al.   Molecular Ecology Resources

Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome

(2011) M. V. EVERETT et al.   Molecular Ecology Resources

Unlocking the potential of genomic technologies for wildlife forensics

(2011) ROB OGDEN   Molecular Ecology Resources

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

(2011) J. E. SEEB et al.   Molecular Ecology Resources

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Linkage Mapping and Comparative Genomics Using Next-Generation RAD Sequencing of a Non-Model Organism

(2011) Simon W. Baxter et al.   PLoS One

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

Adaptation of redband trout in desert and montane environments

(2010) SHAWN R. NARUM et al.   MOLECULAR ECOLOGY

A suite of twelve single nucleotide polymorphism markers for detecting introgression between cutthroat and rainbow trout

(2010) ANDREW S. HARWOOD et al.   Molecular Ecology Resources

Diagnostic single nucleotide polymorphisms for identifying westslope cutthroat trout (Oncorhynchus clarki lewisi), Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (Oncorhynchus mykiss)

(2010) S. T. KALINOWSKI et al.   Molecular Ecology Resources

The Arctic melting pot

(2010) Brendan P. Kelly et al.   NATURE

Rapid spread of invasive genes into a threatened native species

(2010) Benjamin M. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Resolution Melting Analysis for the Discovery of Novel Single-Nucleotide Polymorphisms in Rainbow and Cutthroat Trout for Species Identification

(2010) Molly T. McGlauflin et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Hybridization rapidly reduces fitness of a native trout in the wild

(2009) C. C. Muhlfeld et al.   Biology Letters

Rapid fixation of non-native alleles revealed by genome-wide SNP analysis of hybrid tiger salamanders

(2009) Benjamin M Fitzpatrick et al.   BMC EVOLUTIONARY BIOLOGY

Spatial and temporal spawning dynamics of native westslope cutthroat trout, Oncorhynchus clarkii lewisi, introduced rainbow trout, Oncorhynchus mykiss, and their hybrids

(2009) Clint C. Muhlfeld et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

THE VARIABLE GENOMIC ARCHITECTURE OF ISOLATION BETWEEN HYBRIDIZING SPECIES OF HOUSE MICE

(2009) Katherine C. Teeter et al.   EVOLUTION

Temporal mRNA expression of transforming growth factor-beta superfamily members and inhibitors in the developing rainbow trout ovary

(2009) Scott E. Lankford et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

A powerful regression-based method for admixture mapping of isolation across the genome of hybrids

(2009) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

Six diagnostic single nucleotide polymorphism markers for detecting introgression between cutthroat and rainbow trouts

(2009) AMANDA J. FINGER et al.   Molecular Ecology Resources

Local Habitat, Watershed, and Biotic Factors Influencing the Spread of Hybridization between Native Westslope Cutthroat Trout and Introduced Rainbow Trout

(2009) Clint C. Muhlfeld et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Rainbow trout (Oncorhynchus mykiss) invasion and the spread of hybridization with native westslope cutthroat trout (Oncorhynchus clarkii lewisi)

(2008) Matthew C Boyer et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One