Small RNA Profiling in Dengue Virus 2-Infected Aedes Mosquito Cells Reveals Viral piRNAs and Novel Host miRNAs

Viral noncoding RNAs: more surprises

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Double-Stranded RNA Is Detected by Immunofluorescence Analysis in RNA and DNA Virus Infections, Including Those by Negative-Stranded RNA Viruses

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Towards a molecular understanding of microRNA-mediated gene silencing

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Distinct sets of PIWI proteins produce arbovirus and transposon-derived piRNAs inAedes aegyptimosquito cells

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limma powers differential expression analyses for RNA-sequencing and microarray studies

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Identification and Characterization of Cyprinid Herpesvirus-3 (CyHV-3) Encoded MicroRNAs

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piRNA-guided slicing specifies transcripts for Zucchini-dependent, phased piRNA biogenesis

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piRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production

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The Role of RNA Interference (RNAi) in Arbovirus-Vector Interactions

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Dengue virus infection alters post-transcriptional modification of microRNAs in the mosquito vector Aedes aegypti

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RNA interference-mediated antiviral defense in insects

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Selective MicroRNA-Offset RNA Expression in Human Embryonic Stem Cells

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MicroRNAs of two medically important mosquito species:Aedes aegyptiandAnopheles stephensi

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Expression of Mosquito MicroRNA Aae-miR-2940-5p Is Downregulated in Response to West Nile Virus Infection To Restrict Viral Replication

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Regulation of microRNA biogenesis

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Mosquito andDrosophilaentomobirnaviruses suppress dsRNA- and siRNA-induced RNAi

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Are viral small RNA regulating Dengue virus replication beyond serotype 2?

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A "microRNA-like" small RNA expressed by Dengue virus?

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MicroRNA-like viral small RNA from Dengue virus 2 autoregulates its replication in mosquito cells

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Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity

(2014) Amy H. Buck et al.   Nature Communications

The long and short of antiviral defense: small RNA-based immunity in insects

(2014) Alfred W Bronkhorst et al.   Current Opinion in Virology

Next Generation Sequencing Reveals Regulation of Distinct Aedes microRNAs during Chikungunya Virus Development

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Identification of a new dengue virus inhibitor that targets the viral NS4B protein and restricts genomic RNA replication

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Regulation of microRNA biogenesis and turnover by animals and their viruses

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MicroRNA levels are modulated inAedes aegyptiafter exposure to Dengue-2

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Knockdown of piRNA pathway proteins results in enhanced Semliki Forest virus production in mosquito cells

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miR-252 of the Asian tiger mosquitoAedes albopictusregulates dengue virus replication by suppressing the expression of the dengue virus envelope protein

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miRNAs: Small Genes with Big Potential in Metazoan Phylogenetics

(2013) James E. Tarver et al.   MOLECULAR BIOLOGY AND EVOLUTION

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Dicer-2 Processes Diverse Viral RNA Species

(2013) Leah R. Sabin et al.   PLoS One

Lower and upper stem-single-stranded RNA junctions together determine the Drosha cleavage site

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The Developmental Transcriptome of the Mosquito Aedes aegypti , an Invasive Species and Major Arbovirus Vector

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Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus

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RNA Interference Targets Arbovirus Replication in Culicoides Cells

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Dicer-2- and Piwi-Mediated RNA Interference in Rift Valley Fever Virus-Infected Mosquito Cells

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Fast gapped-read alignment with Bowtie 2

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Deep annotation of mouse iso-miR and iso-moR variation

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Arbovirus-Derived piRNAs Exhibit a Ping-Pong Signature in Mosquito Cells

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Convergent Evolution of Argonaute-2 Slicer Antagonism in Two Distinct Insect RNA Viruses

(2012) Joël T. van Mierlo et al.   PLoS Pathogens

Production of Virus-Derived Ping-Pong-Dependent piRNA-like Small RNAs in the Mosquito Soma

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Small RNA profiling of Dengue virus-mosquito interactions implicates the PIWI RNA pathway in anti-viral defense

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West Nile virus encodes a microRNA-like small RNA in the 3' untranslated region which up-regulates GATA4 mRNA and facilitates virus replication in mosquito cells

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miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

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Manipulation of FASTQ data with Galaxy

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Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

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Functional microRNA generated from a cytoplasmic RNA virus

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Noncanonical cytoplasmic processing of viral microRNAs

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Comparison of Dengue Virus Type 2-Specific Small RNAs from RNA Interference-Competent and –Incompetent Mosquito Cells

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C6/36 Aedes albopictus Cells Have a Dysfunctional Antiviral RNA Interference Response

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Present and future arboviral threats

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Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs

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MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

A distinct class of small RNAs arises from pre-miRNA–proximal regions in a simple chordate

(2009) Weiyang Shi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Mode of transmission and the evolution of arbovirus virulence in mosquito vectors

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Dengue Virus Type 2 Infections of Aedes aegypti Are Modulated by the Mosquito's RNA Interference Pathway

(2009) Irma Sánchez-Vargas et al.   PLoS Pathogens

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Improved northern blot method for enhanced detection of small RNA

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