Dengue virus infection alters post-transcriptional modification of microRNAs in the mosquito vector Aedes aegypti

Bacterial Infection Drives the Expression Dynamics of microRNAs and Their isomiRs

(2015) Katherine J. Siddle et al.   PLoS Genetics

IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies

(2015) Phillipe Loher et al.   Oncotarget

Regulation of miRNA strand selection: follow the leader?

(2014) Hedda A. Meijer et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

A challenge for miRNA: multiple isomiRs in miRNAomics

(2014) Li Guo et al.   GENE

A genome-wide screen for non-template nucleotides and isomiR repertoires in miRNAs indicates dynamic and versatile microRNAome

(2014) Li Guo et al.   MOLECULAR BIOLOGY REPORTS

5′ isomiR variation is of functional and evolutionary importance

(2014) Geok Chin Tan et al.   NUCLEIC ACIDS RESEARCH

Accuracy of MicroRNA Discovery Pipelines in Non-Model Organisms Using Closely Related Species Genomes

(2014) Kayvan Etebari et al.   PLoS One

Wolbachia Infection Modifies the Profile, Shuttling and Structure of MicroRNAs in a Mosquito Cell Line

(2014) Jaime G. Mayoral et al.   PLoS One

Genetic Analysis of Loop Sequences in the Let-7 Gene Family Reveal a Relationship between Loop Evolution and Multiple IsomiRs

(2014) Tingming Liang et al.   PLoS One

MicroRNA-like viral small RNA from Dengue virus 2 autoregulates its replication in mosquito cells

(2014) M. Hussain et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor

(2013) Franc Llorens et al.   BMC GENOMICS

Close association between paralogous multiple isomiRs and paralogous/orthologues miRNA sequences implicates dominant sequence selection across various animal species

(2013) Li Guo et al.   GENE

Selected isomiR expression profiles via arm switching?

(2013) Li Guo et al.   GENE

MicroRNA levels are modulated inAedes aegyptiafter exposure to Dengue-2

(2013) C. L. Campbell et al.   INSECT MOLECULAR BIOLOGY

A meta-analysis revealed insights into the sources, conservation and impact of microRNA 5′-isoforms in four model species

(2013) Jing Xia et al.   NUCLEIC ACIDS RESEARCH

Concordant and Discordant Regulation of Target Genes by miR-31 and Its Isoforms

(2013) Yu-Tzu Chan et al.   PLoS One

Distinctive Profile of IsomiR Expression and Novel MicroRNAs in Rat Heart Left Ventricle

(2013) Mary K. McGahon et al.   PLoS One

Beta Cell 5′-Shifted isomiRs Are Candidate Regulatory Hubs in Type 2 Diabetes

(2013) Jeanette Baran-Gale et al.   PLoS One

Signal identification for rare and weak features: higher criticism or false discovery rates?

(2012) Bernd Klaus et al.   BIOSTATISTICS

miRNA arm selection and isomiR distribution in gastric cancer

(2012) Sung-Chou Li et al.   BMC GENOMICS

The Structure of Human Argonaute-2 in Complex with miR-20a

(2012) Elad Elkayam et al.   CELL

Uridylation of miRNAs by HEN1 SUPPRESSOR1 in Arabidopsis

(2012) Guodong Ren et al.   CURRENT BIOLOGY

The Arabidopsis Nucleotidyl Transferase HESO1 Uridylates Unmethylated Small RNAs to Trigger Their Degradation

(2012) Yuanyuan Zhao et al.   CURRENT BIOLOGY

Consistent isomiR expression patterns and 3′ addition events in miRNA gene clusters and families implicate functional and evolutionary relationships

(2012) Li Guo et al.   MOLECULAR BIOLOGY REPORTS

Deep annotation of mouse iso-miR and iso-moR variation

(2012) Hongjun Zhou et al.   NUCLEIC ACIDS RESEARCH

TRBP alters human precursor microRNA processing in vitro

(2012) H. Y. Lee et al.   RNA

IsomiRs – the overlooked repertoire in the dynamic microRNAome

(2012) Corine T. Neilsen et al.   TRENDS IN GENETICS

Stability of miRNA 5′terminal and seed regions is correlated with experimentally observed miRNA-mediated silencing efficacy

(2012) Naoki Hibio et al.   Scientific Reports

The role of the precursor structure in the biogenesis of microRNA

(2011) Julia Starega-Roslan et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The Exoribonuclease Nibbler Controls 3′ End Processing of MicroRNAs in Drosophila

(2011) Nan Liu et al.   CURRENT BIOLOGY

The 3′-to-5′ Exoribonuclease Nibbler Shapes the 3′ Ends of MicroRNAs Bound to Drosophila Argonaute1

(2011) Bo W. Han et al.   CURRENT BIOLOGY

Practical Aspects of microRNA Target Prediction

(2011) T. M. Witkos et al.   CURRENT MOLECULAR MEDICINE

Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity

(2011) S. K. Wyman et al.   GENOME RESEARCH

A Comprehensive Survey of miRNA Repertoire and 3′ Addition Events in the Placentas of Patients with Pre-Eclampsia from High-Throughput Sequencing

(2011) Li Guo et al.   PLoS One

Deep sequencing of microRNA precursors reveals extensive 3' end modification

(2011) M. A. Newman et al.   RNA

MicroRNAs and their isomiRs function cooperatively to target common biological pathways

(2011) Nicole Cloonan et al.   GENOME BIOLOGY

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

(2010) A. M. Burroughs et al.   GENOME RESEARCH

A myriad of miRNA variants in control and Huntington’s disease brain regions detected by massively parallel sequencing

(2010) Eulàlia Martí et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Dynamic isomiR regulation in Drosophila development

(2010) S. L. Fernandez-Valverde et al.   RNA

Complexity of the microRNA repertoire revealed by next-generation sequencing

(2010) L. W. Lee et al.   RNA

Active turnover modulates mature microRNA activity in Caenorhabditis elegans

(2009) Saibal Chatterjee et al.   NATURE

Many roads to maturity: microRNA biogenesis pathways and their regulation

(2009) Julia Winter et al.   NATURE CELL BIOLOGY

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

(2009) Michael Hackenberg et al.   NUCLEIC ACIDS RESEARCH

Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications

(2009) H. Alexander Ebhardt et al.   NUCLEIC ACIDS RESEARCH

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

(2008) R. D. Morin et al.   GENOME RESEARCH

VectorBase: a data resource for invertebrate vector genomics

(2008) D. Lawson et al.   NUCLEIC ACIDS RESEARCH

The Mechanism Selecting the Guide Strand from Small RNA Duplexes is Different Among Argonaute Proteins

(2008) Atsushi Takeda et al.   PLANT AND CELL PHYSIOLOGY

Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing

(2008) A. Azuma-Mukai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA