miRNAs: Small Genes with Big Potential in Metazoan Phylogenetics

Evolution and function of de novo originated genes

(2013) Dong-Dong Wu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods

(2013) Jerome H. L. Hui et al.   NUCLEIC ACIDS RESEARCH

Do miRNAs have a deep evolutionary history?

(2012) James E. Tarver et al.   BIOESSAYS

Large-scale analysis of microRNA evolution

(2012) José Guerra-Assunção et al.   BMC GENOMICS

Deep sequencing of small RNAs confirms an annelid affinity of Myzostomida

(2012) Conrad Helm et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolution and function of the extended miR-2 microRNA family

(2012) Antonio Marco et al.   RNA Biology

MicroRNAs support a turtle + lizard clade

(2011) T. R. Lyson et al.   Biology Letters

An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma

(2011) Pavel Sumazin et al.   CELL

The role of the precursor structure in the biogenesis of microRNA

(2011) Julia Starega-Roslan et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Molecular paleobiological insights into the origin of the Brachiopoda

(2011) Erik A. Sperling et al.   EVOLUTION & DEVELOPMENT

Resolving phylogenetic signal from noise when divergence is rapid: A new look at the old problem of echinoderm class relationships

(2011) Davide Pisani et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Acoelomorph flatworms are deuterostomes related to Xenoturbella

(2011) Hervé Philippe et al.   NATURE

Evolution of microRNA diversity and regulation in animals

(2011) Eugene Berezikov   NATURE REVIEWS GENETICS

Gene silencing by microRNAs: contributions of translational repression and mRNA decay

(2011) Eric Huntzinger et al.   NATURE REVIEWS GENETICS

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda

(2011) L. I. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Episodic radiations in the fly tree of life

(2011) B. M. Wiegmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals

(2011) D. H. Erwin et al.   SCIENCE

Improving animal phylogenies with genomic data

(2011) Maximilian J. Telford et al.   TRENDS IN GENETICS

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

(2011) Hervé Philippe et al.   PLOS BIOLOGY

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

(2010) E. Berezikov et al.   GENOME RESEARCH

Identification of homologous microRNAs in 56 animal genomes

(2010) Sung-Chou Li et al.   GENOMICS

Mammalian Evolution May not Be Strictly Bifurcating

(2010) B. M. Hallstrom et al.   MOLECULAR BIOLOGY AND EVOLUTION

mirTools: microRNA profiling and discovery based on high-throughput sequencing

(2010) Erle Zhu et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate

(2010) A. M. Heimberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata

(2010) O. Rota-Stabelli et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression

(2009) Wei-Chi Wang et al.   BMC BIOINFORMATICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

The deep evolution of metazoan microRNAs

(2009) Benjamin M. Wheeler et al.   EVOLUTION & DEVELOPMENT

Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Myr missing Precambrian fossil record of siliceous sponge spicules

(2009) E. A. SPERLING et al.   Geobiology

Assessing the root of bilaterian animals with scalable phylogenomic methods

(2009) A. Hejnol et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record

(2009) E. A. Sperling et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Identification and characterization of novel amphioxus microRNAs by Solexa sequencing

(2009) Xi Chen et al.   GENOME BIOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Wagner and Dollo: A Stochastic Duet by Composing Two Parsimonious Solos

(2008) Alexander V. Alekseyenko et al.   SYSTEMATIC BIOLOGY

Testing Congruence in Phylogenomic Analysis

(2008) Jessica W. Leigh et al.   SYSTEMATIC BIOLOGY