Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera

Biased introgression of mitochondrial and nuclear genes: a comparison of diploid and haplodiploid systems

(2015) Manus M. Patten et al.   MOLECULAR ECOLOGY

Alpha taxonomy of the genus Kessleria Nowicki, 1864, revisited in light of DNA-barcoding (Lepidoptera, Yponomeutidae)

(2015) Peter Huemer et al.   ZooKeys

Integrative taxonomy reveals a new species of Callisto (Lepidoptera, Gracillariidae) in the Alps

(2015) Natalia Kirichenko et al.   ZooKeys

DNA barcode reference library for Iberian butterflies enables a continental-scale preview of potential cryptic diversity

(2015) Vlad Dincă et al.   Scientific Reports

DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent

(2014) Graham Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Pre- and post-mating reproductive barriers drive divergence of five sympatric species of Naryciinae moths (Lepidoptera: Psychidae)

(2014) Jelmer A. Elzinga et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Use of RAD sequencing for delimiting species

(2014) E Pante et al.   HEREDITY

DNA barcode-based delineation of putative species: efficient start for taxonomic workflows

(2014) Mari Kekkonen et al.   Molecular Ecology Resources

The incidence of species-level paraphyly in animals: A re-assessment

(2014) Howard A. Ross   MOLECULAR PHYLOGENETICS AND EVOLUTION

Barcoding Beetles: A Regional Survey of 1872 Species Reveals High Identification Success and Unusually Deep Interspecific Divergences

(2014) Mikko Pentinsaari et al.   PLoS One

Axiomatic Opportunities and Obstacles for Inferring a Species Tree from Gene Trees

(2014) Mike Steel et al.   SYSTEMATIC BIOLOGY

Species Delimitation using Genome-Wide SNP Data

(2014) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae)

(2014) Peter Huemer et al.   ZooKeys

Sattleria revisited: unexpected cryptic diversity on the Balkan Peninsula and in the south-eastern Alps (Lepidoptera: Gelechiidae)

(2014) PETER HUEMER et al.   ZOOTAXA

A general species delimitation method with applications to phylogenetic placements

(2013) Jiajie Zhang et al.   BIOINFORMATICS

DNA barcoding reveals a largely unknown fauna of Gracillariidae leaf-mining moths in the Neotropics

(2013) D. C. Lees et al.   Molecular Ecology Resources

A Large-Scale, Higher-Level, Molecular Phylogenetic Study of the Insect Order Lepidoptera (Moths and Butterflies)

(2013) Jerome C. Regier et al.   PLoS One

A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System

(2013) Sujeevan Ratnasingham et al.   PLoS One

Genetic Patterns in European Geometrid Moths Revealed by the Barcode Index Number (BIN) System

(2013) Axel Hausmann et al.   PLoS One

Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets

(2013) Tomochika Fujisawa et al.   SYSTEMATIC BIOLOGY

Upstream Analyses Create Problems with DNA-Based Species Delimitation

(2013) Melisa Olave et al.   SYSTEMATIC BIOLOGY

Review of the Eulamprotes wilkella species-group based on morphology and DNA barcodes, with descriptions of new taxa (Lepidoptera, Gelechiidae)

(2013) PETER HUEMER et al.   ZOOTAXA

Whole-community DNA barcoding reveals a spatio-temporal continuum of biodiversity at species and genetic levels

(2013) Andrés Baselga et al.   Nature Communications

Wide-ranging barcoding aids discovery of one-third increase of species richness in presumably well-investigated moths

(2013) Marko Mutanen et al.   Scientific Reports

DNA barcodes and morphology reveal a hybrid hawkmoth in Tahiti (Lepidoptera : Sphingidae)

(2012) R. Rougerie et al.   INVERTEBRATE SYSTEMATICS

Allopatry as a Gordian Knot for Taxonomists: Patterns of DNA Barcode Divergence in Arctic-Alpine Lepidoptera

(2012) Marko Mutanen et al.   PLoS One

Deep sympatric mitochondrial divergence without reproductive isolation in the common redstartPhoenicurus phoenicurus

(2012) Silje Hogner et al.   Ecology and Evolution

Deep sympatric mtDNA divergence in the autumnal moth (Epirrita autumnata)

(2012) Kjersti S. Kvie et al.   Ecology and Evolution

BIO::Phylo-phyloinformatic analysis using perl

(2011) Rutger A Vos et al.   BMC BIOINFORMATICS

On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature

(2011) Amrita Srivathsan et al.   CLADISTICS

PROGRESS TOWARD A GENERAL SPECIES CONCEPT

(2011) Bernhard Hausdorf   EVOLUTION

Random interbreeding between cryptic lineages of the Common Raven: evidence for speciation in reverse

(2011) WILLIAM C. WEBB et al.   MOLECULAR ECOLOGY

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Reappraisal of the “Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)”: When poor science meets GenBank

(2011) Dick S.J. Groenenberg et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Unexpected layers of cryptic diversity in wood white Leptidea butterflies

(2011) Vlad Dincă et al.   Nature Communications

The integrative future of taxonomy

(2010) Jose M. Padial et al.   Frontiers in Zoology

ALTER: program-oriented conversion of DNA and protein alignments

(2010) Daniel Glez-Pe�a et al.   NUCLEIC ACIDS RESEARCH

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive gene and taxon coverage elucidates radiation patterns in moths and butterflies

(2010) M. Mutanen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Integrative Taxonomy: A Multisource Approach to Exploring Biodiversity

(2009) Birgit C. Schlick-Steiner et al.   Annual Review of Entomology

Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada

(2009) Xin Zhou et al.   Frontiers in Zoology

Filling the gap - COI barcode resolution in eastern Palearctic birds

(2009) Kevin CR Kerr et al.   Frontiers in Zoology

DNA barcoding a regional bee (Hymenoptera: Apoidea) fauna and its potential for ecological studies

(2009) CORY S. SHEFFIELD et al.   Molecular Ecology Resources

The causes of mitochondrial DNA gene tree paraphyly in birds

(2009) Bailey D. McKay et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Prospects for using DNA barcoding to identify spiders in species-rich genera

(2009) Gergin Blagoev et al.   ZooKeys

Identifying earthworms through DNA barcodes: Pitfalls and promise

(2008) Chih-Han Chang et al.   PEDOBIOLOGIA

Preserving Accuracy in GenBank

(2008) M. I. Bidartondo   SCIENCE