DNA barcode-based delineation of putative species: efficient start for taxonomic workflows

Evolution of microgastropods (Ellobioidea, Carychiidae): integrating taxonomic, phylogenetic and evolutionary hypotheses

(2013) Alexander M Weigand et al.   BMC EVOLUTIONARY BIOLOGY

Integrative taxonomy on the fast track - towards more sustainability in biodiversity research

(2013) Alexander Riedel et al.   Frontiers in Zoology

How to fail at species delimitation

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

New Metrics for Comparison of Taxonomies Reveal Striking Discrepancies among Species Delimitation Methods in Madascincus Lizards

(2013) Aurélien Miralles et al.   PLoS One

A DNA ‘Barcode Blitz’: Rapid Digitization and Sequencing of a Natural History Collection

(2013) Paul D. N. Hebert et al.   PLoS One

A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System

(2013) Sujeevan Ratnasingham et al.   PLoS One

Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets

(2013) Tomochika Fujisawa et al.   SYSTEMATIC BIOLOGY

Towards an Australian Bioregionalisation Atlas: A provisional area taxonomy of Australia’s biogeographical regions

(2013) MALTE C. EBACH et al.   ZOOTAXA

Factors affecting species delimitations with the GMYC model: insights from a butterfly survey

(2013) Gerard Talavera et al.   Methods in Ecology and Evolution

Barcoding against a paradox? Combined molecular species delineations reveal multiple cryptic lineages in elusive meiofaunal sea slugs

(2012) Katharina M Jörger et al.   BMC EVOLUTIONARY BIOLOGY

Molecular-based rapid inventories of sympatric diversity: A comparison of DNA barcode clustering methods applied to geography-based vs clade-based sampling of amphibians

(2012) Andrea Paz et al.   JOURNAL OF BIOSCIENCES

Multi-locus species delimitation in closely related animals and fungi: one marker is not enough

(2012) JULIAN R. DUPUIS et al.   MOLECULAR ECOLOGY

Large-scale species delimitation method for hyperdiverse groups

(2012) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

DNA barcoding a regional fauna: Irish solitary bees

(2012) Karl N. Magnacca et al.   Molecular Ecology Resources

Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding

(2012) SAMUEL D. J. BROWN et al.   Molecular Ecology Resources

Phylogenetics of the millipede genus Brachycybe Wood, 1864 (Diplopoda: Platydesmida: Andrognathidae): Patterns of deep evolutionary history and recent speciation

(2012) Michael S. Brewer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

An exploration of species boundaries in turret-building tarantulas of the Mojave Desert (Araneae, Mygalomorphae, Theraphosidae, Aphonopelma)

(2012) Brent E. Hendrixson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Barcoding and Border Biosecurity: Identifying Cyprinid Fishes in the Aquarium Trade

(2012) Rupert A. Collins et al.   PLoS One

Allopatry as a Gordian Knot for Taxonomists: Patterns of DNA Barcode Divergence in Arctic-Alpine Lepidoptera

(2012) Marko Mutanen et al.   PLoS One

The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna

(2012) C. Q. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-locus species delimitation: a test of the mixed Yule-coalescent model, with an empirical application to Philippine round-leaf bats

(2012) J. A. Esselstyn et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Barcoding's next top model: an evaluation of nucleotide substitution models for specimen identification

(2012) Rupert A. Collins et al.   Methods in Ecology and Evolution

A comparison of DNA-based methods for delimiting species in a Cretan land snail radiation reveals shortcomings of exclusively molecular taxonomy

(2011) Jan Sauer et al.   CLADISTICS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

DNA Barcoding the Geometrid Fauna of Bavaria (Lepidoptera): Successes, Surprises, and Questions

(2011) Axel Hausmann et al.   PLoS One

Determining Species Boundaries in a World Full of Rarity: Singletons, Species Delimitation Methods

(2011) Gwynne S. Lim et al.   SYSTEMATIC BIOLOGY

Unexpected layers of cryptic diversity in wood white Leptidea butterflies

(2011) Vlad Dincă et al.   Nature Communications

ALTER: program-oriented conversion of DNA and protein alignments

(2010) Daniel Glez-Pe�a et al.   NUCLEIC ACIDS RESEARCH

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

(2009) Surendra Kumar et al.   BMC BIOINFORMATICS

Can mtDNA Barcodes Be Used to Delimit Species? A Response to Pons et al. (2006)

(2009) Konrad Lohse   SYSTEMATIC BIOLOGY

Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation

(2009) Michael T. Monaghan et al.   SYSTEMATIC BIOLOGY

The conditioned reconstructed process

(2008) Tanja Gernhard   JOURNAL OF THEORETICAL BIOLOGY

caos software for use in character-based DNA barcoding

(2008) INDRA NEIL SARKAR et al.   Molecular Ecology Resources

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY