Biological function derived from predicted structures in CASP11

Human ISPD Is a Cytidyltransferase Required for Dystroglycan O-Mannosylation

(2015) Moniek Riemersma et al.   CHEMISTRY & BIOLOGY

Influence of Vanin-1 and Catalytic Products in Liver During Normal and Oxidative Stress Conditions

(2015) Daniel Ferreira et al.   CURRENT MEDICINAL CHEMISTRY

Protein models docking benchmark 2

(2015) Ivan Anishchenko et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The Crystal Structure of the Drosophila Germline Inducer Oskar Identifies Two Domains with Distinct Vasa Helicase- and RNA-Binding Activities

(2015) Mandy Jeske et al.   Cell Reports

Crystal Structure of the cGMP-dependent Protein Kinase II Leucine Zipper and Rab11b Protein Complex Reveals Molecular Details of G-kinase-specific Interactions

(2014) Albert S. Reger et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural Basis for the Binding Specificity of Human Recepteur d'Origine Nantais (RON) Receptor Tyrosine Kinase to Macrophage-stimulating Protein

(2014) Kinlin L. Chao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

SuSPect: Enhanced Prediction of Single Amino Acid Variant (SAV) Phenotype Using Network Features

(2014) Christopher M. Yates et al.   JOURNAL OF MOLECULAR BIOLOGY

Structure and immune recognition of trimeric pre-fusion HIV-1 Env

(2014) Marie Pancera et al.   NATURE

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

(2014) Simon A. Forbes et al.   NUCLEIC ACIDS RESEARCH

BioAssemblyModeler (BAM): User-Friendly Homology Modeling of Protein Homo- and Heterooligomers

(2014) Maxim V. Shapovalov et al.   PLoS One

A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE)

(2014) Tsung-Jung Wu et al.   Database-The Journal of Biological Databases and Curation

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

(2013) Valerio Mariani et al.   BIOINFORMATICS

Molecular prioritization strategies to identify functional genetic variants in the cardiovascular disease-associated expression QTL Vanin-1

(2013) Belinda J Kaskow et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

The Role of Balanced Training and Testing Data Sets for Binary Classifiers in Bioinformatics

(2013) Qiong Wei et al.   PLoS One

Prediction of phenotypes of missense mutations in human proteins from biological assemblies

(2013) Qiong Wei et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Definition and classification of evaluation units for CASP10

(2013) Todd J. Taylor et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

How good is automated protein docking?

(2013) Dima Kozakov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of residue-residue contact prediction in CASP10

(2013) Bohdan Monastyrskyy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of ligand binding site predictions in CASP10

(2013) Tiziano Gallo Cassarino et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of predictions in the CASP10 model refinement category

(2013) Timothy Nugent et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Crystal Structure of a Soluble Cleaved HIV-1 Envelope Trimer

(2013) J.-P. Julien et al.   SCIENCE

Cryo-EM Structure of a Fully Glycosylated Soluble Cleaved HIV-1 Envelope Trimer

(2013) D. Lyumkis et al.   SCIENCE

Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB

(2012) Q. Xu et al.   BIOINFORMATICS

Optimal simultaneous superpositioning of multiple structures with missing data

(2012) Douglas L. Theobald et al.   BIOINFORMATICS

Structure of the haptoglobin–haemoglobin complex

(2012) Christian Brix Folsted Andersen et al.   NATURE

ISPD loss-of-function mutations disrupt dystroglycan O-mannosylation and cause Walker-Warburg syndrome

(2012) Tobias Willer et al.   NATURE GENETICS

Using RosettaLigand for Small Molecule Docking into Comparative Models

(2012) Kristian W. Kaufmann et al.   PLoS One

CD45-deficient severe combined immunodeficiency caused by uniparental disomy

(2012) J. L. Roberts et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring the diversity of SPRY/B30.2-mediated interactions

(2012) Livia Perfetto et al.   TRENDS IN BIOCHEMICAL SCIENCES

SwissDock, a protein-small molecule docking web service based on EADock DSS

(2011) A. Grosdidier et al.   NUCLEIC ACIDS RESEARCH

Assessment of ligand-binding residue predictions in CASP9

(2011) Tobias Schmidt et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Graphlet Kernels for Prediction of Functional Residues in Protein Structures

(2010) Vladimir Vacic et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Predicting the accuracy of protein-ligand docking on homology models

(2010) Annalisa Bordogna et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Structural Basis for Par-4 Recognition by the SPRY Domain- and SOCS Box-Containing Proteins SPSB1, SPSB2, and SPSB4

(2010) Panagis Filippakopoulos et al.   JOURNAL OF MOLECULAR BIOLOGY

Numb Independently Antagonizes Sanpodo Membrane Targeting and Notch Signaling in Drosophila Sensory Organ Precursor Cells

(2010) Xin Tong et al.   MOLECULAR BIOLOGY OF THE CELL

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms

(2010) Q. Xu et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19

(2010) Dima Kozakov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Rapid calcium-dependent activation of Aurora-A kinase

(2010) Olga V. Plotnikova et al.   Nature Communications

Homology modeling in drug discovery: current trends and applications

(2009) Claudio N. Cavasotto et al.   DRUG DISCOVERY TODAY

Molecular Docking Screens Using Comparative Models of Proteins

(2009) Hao Fan et al.   Journal of Chemical Information and Modeling

A Bifunctional Regulatory Element in Human Somatic Wee1 Mediates Cyclin A/Cdk2 Binding and Crm1-Dependent Nuclear Export

(2009) C. Li et al.   MOLECULAR AND CELLULAR BIOLOGY

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of ligand binding residue predictions in CASP8

(2009) Gonzalo López et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Eukaryotic Protein Domains as Functional Units of Cellular Evolution

(2009) J. Jin et al.   Science Signaling

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins

(2008) Qifang Xu et al.   JOURNAL OF MOLECULAR BIOLOGY