High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions

Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600)

(2011) Genna L. Andrews et al.   ANALYTICAL CHEMISTRY

Leaf Spray: Direct Chemical Analysis of Plant Material and Living Plants by Mass Spectrometry

(2011) Jiangjiang Liu et al.   ANALYTICAL CHEMISTRY

Direct Plant Tissue Analysis and Imprint Imaging by Desorption Electrospray Ionization Mass Spectrometry

(2011) Thomas Müller et al.   ANALYTICAL CHEMISTRY

Sulfur Assimilation in Photosynthetic Organisms: Molecular Functions and Regulations of Transporters and Assimilatory Enzymes

(2011) Hideki Takahashi et al.   Annual Review of Plant Biology

Elemental composition determination based on MSn

(2011) Miguel Rojas-Chertó et al.   BIOINFORMATICS

From Data Processing to Multivariate Validation - Essential Steps in Extracting Interpretable Information from Metabolomics Data

(2011) Mattias Eliasson et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

Mass Spectrometry Strategies in Metabolomics

(2011) Zhentian Lei et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A study on retention “projection” as a supplementary means for compound identification by liquid chromatography–mass spectrometry capable of predicting retention with different gradients, flow rates, and instruments

(2011) Paul G. Boswell et al.   JOURNAL OF CHROMATOGRAPHY A

Easy and accurate high-performance liquid chromatography retention prediction with different gradients, flow rates, and instruments by back-calculation of gradient and flow rate profiles

(2011) Paul G. Boswell et al.   JOURNAL OF CHROMATOGRAPHY A

Characterization of a transport activity for long-chain peptides in barley mesophyll vacuoles

(2011) M. Schnell Ramos et al.   JOURNAL OF EXPERIMENTAL BOTANY

Petroleomics: advanced molecular probe for petroleum heavy ends

(2011) Chang S. Hsu et al.   JOURNAL OF MASS SPECTROMETRY

Evaluation of a High Resolving Power Time-of-Flight Mass Spectrometer for Drug Analysis in Terms of Resolving Power and Acquisition Rate

(2011) Anna Pelander et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

A plastidial sodium-dependent pyruvate transporter

(2011) Tsuyoshi Furumoto et al.   NATURE

A Sister Group Contrast Using Untargeted Global Metabolomic Analysis Delineates the Biochemical Regulation Underlying Desiccation Tolerance inSporobolus stapfianus

(2011) Melvin J. Oliver et al.   PLANT CELL

Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns

(2011) Jan Lisec et al.   PLANT JOURNAL

Elemental formula annotation of polar and lipophilic metabolites using13C,15N and34S isotope labelling, in combination with high-resolution mass spectrometry

(2011) Patrick Giavalisco et al.   PLANT JOURNAL

Matrix-assisted laser desorption/ionisation mass spectrometry imaging and its development for plant protein imaging

(2011) Julia Grassl et al.   Plant Methods

Metabolomics of a Single Vacuole Reveals Metabolic Dynamism in an Alga Chara australis

(2011) A. Oikawa et al.   PLANT PHYSIOLOGY

Toward the Storage Metabolome: Profiling the Barley Vacuole

(2011) T. Tohge et al.   PLANT PHYSIOLOGY

A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome

(2011) Stephan Krueger et al.   PLoS One

Trichome-derived O-acyl sugars are a first meal for caterpillars that tags them for predation

(2011) A. Weinhold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MALDI-imaging mass spectrometry - An emerging technique in plant biology

(2011) Stephanie Kaspar et al.   PROTEOMICS

NMR-based plant metabolomics: where do we stand, where do we go?

(2011) Hye Kyong Kim et al.   TRENDS IN BIOTECHNOLOGY

Analysis of the compartmentalized metabolome – a validation of the non-aqueous fractionation technique

(2011) Sebastian Klie   Frontiers in Plant Science

Widely targeted metabolomics and coexpression analysis as tools to identify genes involved in the side-chain elongation steps of aliphatic glucosinolate biosynthesis

(2010) Doris Albinsky et al.   AMINO ACIDS

Computational mass spectrometry for metabolomics: Identification of metabolites and small molecules

(2010) Steffen Neumann et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Atmospheric Pressure Femtosecond Laser Imaging Mass Spectrometry

(2010) Yves Coello et al.   ANALYTICAL CHEMISTRY

Evaluation of Accurate Mass and Relative Isotopic Abundance Measurements in the LTQ-Orbitrap Mass Spectrometer for Further Metabolomics Database Building

(2010) Ying Xu et al.   ANALYTICAL CHEMISTRY

High-Spatial and High-Mass Resolution Imaging of Surface Metabolites ofArabidopsis thalianaby Laser Desorption-Ionization Mass Spectrometry Using Colloidal Silver

(2010) Ji Hyun Jun et al.   ANALYTICAL CHEMISTRY

Discrimination of Wine Attributes by Metabolome Analysis

(2010) Alvaro Cuadros-Inostroza et al.   ANALYTICAL CHEMISTRY

Computing Fragmentation Trees from Tandem Mass Spectrometry Data

(2010) Florian Rasche et al.   ANALYTICAL CHEMISTRY

Recent developments in photorespiration research

(2010) Hermann Bauwe   BIOCHEMICAL SOCIETY TRANSACTIONS

In silico fragmentation for computer assisted identification of metabolite mass spectra

(2010) Sebastian Wolf et al.   BMC BIOINFORMATICS

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

Mass Spectrometric Imaging for Biomedical Tissue Analysis

(2010) Kamila Chughtai et al.   CHEMICAL REVIEWS

Photorespiration: current status and approaches for metabolic engineering

(2010) Veronica G Maurino et al.   CURRENT OPINION IN PLANT BIOLOGY

Mass spectrometry–based proteomics in cell biology

(2010) Tobias C. Walther et al.   JOURNAL OF CELL BIOLOGY

Metabolic profiling of Arabidopsis thaliana epidermal cells

(2010) Berit Ebert et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative analysis of major plant hormones in crude plant extracts by high-performance liquid chromatography–mass spectrometry

(2010) Xiangqing Pan et al.   Nature Protocols

Early response of plant cell to carbon deprivation: in vivo31P-NMR spectroscopy shows a quasi-instantaneous disruption on cytosolic sugars, phosphorylated intermediates of energy metabolism, phosphate partitioning, and intracellular pHs

(2010) Elisabeth Gout et al.   NEW PHYTOLOGIST

Comparative Functional Genomic Analysis of Solanum Glandular Trichome Types

(2010) E. T. McDowell et al.   PLANT PHYSIOLOGY

Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species

(2010) Christian Scherling et al.   PLoS One

Whole genome transcriptome analysis

(2010) Alistair R.R. Forrest et al.   RNA Biology

Not just a circle: flux modes in the plant TCA cycle

(2010) Lee J. Sweetlove et al.   TRENDS IN PLANT SCIENCE

Direct analysis of Stevia leaves for diterpene glycosides by desorption electrospray ionization mass spectrometry

(2009) Ayanna U. Jackson et al.   ANALYST

13C Isotope-Labeled Metabolomes Allowing for Improved Compound Annotation and Relative Quantification in Liquid Chromatography-Mass Spectrometry-based Metabolomic Research

(2009) Patrick Giavalisco et al.   ANALYTICAL CHEMISTRY

Dual Labeling of Metabolites for Metabolome Analysis (DLEMMA): A New Approach for the Identification and Relative Quantification of Metabolites by Means of Dual Isotope Labeling and Liquid Chromatography−Mass Spectrometry

(2009) Liron Feldberg et al.   ANALYTICAL CHEMISTRY

Direct Profiling and Imaging of Epicuticular Waxes on Arabidopsis thaliana by Laser Desorption/Ionization Mass Spectrometry Using Silver Colloid as a Matrix

(2009) Sangwon Cha et al.   ANALYTICAL CHEMISTRY

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

(2009) John R. Yates et al.   Annual Review of Biomedical Engineering

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

Non-targeted metabolite fingerprinting of oriental folk medicine Angelica acutiloba roots by ultra performance liquid chromatography time-of-flight mass spectrometry

(2009) Sukanda Tianniam et al.   JOURNAL OF SEPARATION SCIENCE

Performance evaluation of a high-field orbitrap mass analyzer

(2009) Alexander Makarov et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

MALDI imaging of neutral cuticular lipids in insects and plants

(2009) Vladimír Vrkoslav et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

(2009) Matthias Gstaiger et al.   NATURE REVIEWS GENETICS

An introduction to liquid chromatography–mass spectrometry instrumentation applied in plant metabolomic analyses

(2009) J. William Allwood et al.   PHYTOCHEMICAL ANALYSIS

Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana

(2009) Ryo Nakabayashi et al.   PHYTOCHEMISTRY

Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations

(2009) Stéphanie Arrivault et al.   PLANT JOURNAL

Application of GC-MS for the detection of lipophilic compounds in diverse plant tissues

(2009) Anna Lytovchenko et al.   Plant Methods

AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development

(2009) F. Matsuda et al.   PLANT PHYSIOLOGY

High-Resolution Direct Infusion-Based Mass Spectrometry in Combination with Whole13C Metabolome Isotope Labeling Allows Unambiguous Assignment of Chemical Sum Formulas

(2008) Patrick Giavalisco et al.   ANALYTICAL CHEMISTRY

High-Resolution Mass Spectrometers

(2008) Alan G. Marshall et al.   Annual Review of Analytical Chemistry

SIRIUS: decomposing isotope patterns for metabolite identification†

(2008) Sebastian Böcker et al.   BIOINFORMATICS

Simulated splashes: Elucidating the mechanism of desorption electrospray ionization mass spectrometry

(2008) Anthony B. Costa et al.   CHEMICAL PHYSICS LETTERS

Analytical strategies for LC–MS-based targeted metabolomics

(2008) Wenyun Lu et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Mass spectrometry in systems biology: An overview

(2008) Xiaojun Feng et al.   MASS SPECTROMETRY REVIEWS

High-throughput, nontargeted metabolite fingerprinting using nominal mass flow injection electrospray mass spectrometry

(2008) Manfred Beckmann et al.   Nature Protocols

Comparing whole genomes using DNA microarrays

(2008) David Gresham et al.   NATURE REVIEWS GENETICS

Non-targeted analysis of spatial metabolite composition in strawberry (Fragaria×ananassa) flowers

(2008) Kati Hanhineva et al.   PHYTOCHEMISTRY

Direct profiling and imaging of plant metabolites in intact tissues by using colloidal graphite-assisted laser desorption ionization mass spectrometry

(2008) Sangwon Cha et al.   PLANT JOURNAL

MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

(2008) Fumio Matsuda et al.   PLANT JOURNAL

Nonuniform distribution of glucosinolates in Arabidopsis thaliana leaves has important consequences for plant defense

(2008) R. Shroff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic Diversification--Independent Assembly of Operon-Like Gene Clusters in Different Plants

(2008) B. Field et al.   SCIENCE