SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

COMPARTMENTS: unification and visualization of protein subcellular localization evidence

(2014) J. X. Binder et al.   Database-The Journal of Biological Databases and Curation

LITTLE NUCLEI 1 and 4 Regulate Nuclear Morphology in Arabidopsis thaliana

(2013) Yuki Sakamoto et al.   PLANT AND CELL PHYSIOLOGY

PSI: A Comprehensive and Integrative Approach for Accurate Plant Subcellular Localization Prediction

(2013) Lili Liu et al.   PLoS One

A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts

(2012) Christopher Carrie et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Predicting multiplex subcellular localization of proteins using protein-protein interaction network: a comparative study

(2012) Jonathan Q Jiang et al.   BMC BIOINFORMATICS

Construction of Plastid Reference Proteomes for Maize and Arabidopsis and Evaluation of Their Orthologous Relationships; The Concept of Orthoproteomics

(2012) Mingshu Huang et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Proteomics Reveals Dynamic Changes in the Plasma Membrane DuringArabidopsisImmune Signaling

(2012) James Mitch Elmore et al.   MOLECULAR & CELLULAR PROTEOMICS

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

(2012) Sandra K. Tanz et al.   NUCLEIC ACIDS RESEARCH

Isolation and Proteomic Characterization of the Arabidopsis Golgi Defines Functional and Novel Components Involved in Plant Cell Wall Biosynthesis

(2012) H. T. Parsons et al.   PLANT PHYSIOLOGY

Systematic Identification of Functional Plant Modules through the Integration of Complementary Data Sources

(2012) K. S. Heyndrickx et al.   PLANT PHYSIOLOGY

Putative Glycosyltransferases and Other Plant Golgi Apparatus Proteins Are Revealed by LOPIT Proteomics

(2012) N. Nikolovski et al.   PLANT PHYSIOLOGY

An Ensemble Classifier for Eukaryotic Protein Subcellular Location Prediction Using Gene Ontology Categories and Amino Acid Hydrophobicity

(2012) Liqi Li et al.   PLoS One

Machine learning for improved pathological staging of prostate cancer: A performance comparison on a range of classifiers

(2011) Olivier Regnier-Coudert et al.   ARTIFICIAL INTELLIGENCE IN MEDICINE

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Both the Hydrophobicity and a Positively Charged Region Flanking the C-Terminal Region of the Transmembrane Domain of Signal-Anchored Proteins Play Critical Roles in Determining Their Targeting Specificity to the Endoplasmic Reticulum or Endosymbiotic Organelles inArabidopsisCells

(2011) Junho Lee et al.   PLANT CELL

PROlocalizer: integrated web service for protein subcellular localization prediction

(2010) Kirsti Laurila et al.   AMINO ACIDS

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

Discriminative Motif Finding for Predicting Protein Subcellular Localization

(2010) Tien-ho Lin et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Analysis of theArabidopsisCytosolic Proteome Highlights Subcellular Partitioning of Central Plant Metabolism

(2010) Jun Ito et al.   JOURNAL OF PROTEOME RESEARCH

YLoc—an interpretable web server for predicting subcellular localization

(2010) Sebastian Briesemeister et al.   NUCLEIC ACIDS RESEARCH

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH

Genome-Wide Computational Function Prediction of Arabidopsis Proteins by Integration of Multiple Data Sources

(2010) Y. A. I. Kourmpetis et al.   PLANT PHYSIOLOGY

MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data

(2010) H. J. Joshi et al.   PLANT PHYSIOLOGY

Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization

(2010) Kuo-Chen Chou et al.   PLoS One

Prediction of subcellular locations of proteins: Where to proceed?

(2010) Kenichiro Imai et al.   PROTEOMICS

MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction

(2009) Torsten Blum et al.   BMC BIOINFORMATICS

Mapping the human membrane proteome: a majority of the human membrane proteins can be classified according to function and evolutionary origin

(2009) Markus Almén et al.   BMC BIOLOGY

Protein-protein interaction as a predictor of subcellular location

(2009) Chang Jin Shin et al.   BMC Systems Biology

Exploring the Function-Location Nexus: Using Multiple Lines of Evidence in Defining the Subcellular Location of Plant Proteins

(2009) A. H. Millar et al.   PLANT CELL

Systematic Localization of the Arabidopsis Core Cell Cycle Proteins Reveals Novel Cell Division Complexes

(2009) J. Boruc et al.   PLANT PHYSIOLOGY

The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program

(2008) Michel Schneider et al.   Journal of Proteomics

PPDB, the Plant Proteomics Database at Cornell

(2008) Qi Sun et al.   NUCLEIC ACIDS RESEARCH

ATTED-II provides coexpressed gene networks for Arabidopsis

(2008) T. Obayashi et al.   NUCLEIC ACIDS RESEARCH

Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome

(2008) Boris Zybailov et al.   PLoS One

Plasma membrane proteome in Arabidopsis and rice

(2008) Setsuko Komatsu   PROTEOMICS