A method for accounting for maintenance costs in flux balance analysis improves the prediction of plant cell metabolic phenotypes under stress conditions

Modelling metabolic CO2evolution - a fresh perspective on respiration

(2013) LEE J. SWEETLOVE et al.   PLANT CELL AND ENVIRONMENT

The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a complex response to changes in nitrogen supply

(2013) Shyam K. Masakapalli et al.   PLANT JOURNAL

Plant genome-scale metabolic reconstruction and modelling

(2012) Cristiana Gomes de Oliveira Dal’Molin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Frontiers in metabolic reconstruction and modeling of plant genomes

(2012) S. M. D. Seaver et al.   JOURNAL OF EXPERIMENTAL BOTANY

Pulsing of Membrane Potential in Individual Mitochondria: A Stress-Induced Mechanism to Regulate Respiratory Bioenergetics in Arabidopsis

(2012) M. Schwarzlander et al.   PLANT CELL

Predictive Modeling of Biomass Component Tradeoffs in Brassica napus Developing Oilseeds Based on in Silico Manipulation of Storage Metabolism

(2012) J. Schwender et al.   PLANT PHYSIOLOGY

Are we ready for genome-scale modeling in plants?

(2012) Eva Collakova et al.   PLANT SCIENCE

Multidimensional Optimality of Microbial Metabolism

(2012) R. Schuetz et al.   SCIENCE

A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology

(2011) Aarash Bordbar et al.   BMC Systems Biology

Two-Phase Resolution of Polyploidy in theArabidopsisMetabolic Network Gives Rise to Relative and Absolute Dosage Constraints

(2011) Michaël Bekaert et al.   PLANT CELL

Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos

(2011) Jordan Hay et al.   PLANT JOURNAL

Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity

(2011) S. Mintz-Oron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flux-Balance Modeling of Plant Metabolism

(2011) Lee J. Sweetlove et al.   Frontiers in Plant Science

The biomass objective function

(2010) Adam M Feist et al.   CURRENT OPINION IN MICROBIOLOGY

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis

(2010) C. G. de Oliveira Dal'Molin et al.   PLANT PHYSIOLOGY

A Genome-Scale Metabolic Model Accurately Predicts Fluxes in Central Carbon Metabolism under Stress Conditions

(2010) Thomas C.R. Williams et al.   PLANT PHYSIOLOGY

Intracellular Metabolite Transporters in Plants

(2009) Nicole Linka et al.   Molecular Plant

Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis

(2009) Maria Piques et al.   Molecular Systems Biology

Subcellular Flux Analysis of Central Metabolism in a Heterotrophic Arabidopsis Cell Suspension Using Steady-State Stable Isotope Labeling

(2009) S. K. Masakapalli et al.   PLANT PHYSIOLOGY

A Genome-Scale Metabolic Model of Arabidopsis and Some of Its Properties

(2009) M. G. Poolman et al.   PLANT PHYSIOLOGY

Detection of stoichiometric inconsistencies in biomolecular models

(2008) A. Gevorgyan et al.   BIOINFORMATICS

Proton-translocating transhydrogenase: an update of unsolved and controversial issues

(2008) Anders Pedersen et al.   JOURNAL OF BIOENERGETICS AND BIOMEMBRANES

Isotopic non-stationary 13C gluconate tracer method for accurate determination of the pentose phosphate pathway split-ratio in Penicillium chrysogenum

(2008) Zheng Zhao et al.   METABOLIC ENGINEERING