Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family

Deciphering Thylakoid Sub-compartments using a Mass Spectrometry-based Approach

(2014) Martino Tomizioli et al.   MOLECULAR & CELLULAR PROTEOMICS

Characterization of the GGPP synthase gene family in Arabidopsis thaliana

(2013) Gilles Beck et al.   PLANT MOLECULAR BIOLOGY

Arabidopsis peroxisome proteomics

(2013) John D. Bussell et al.   Frontiers in Plant Science

Genome and gene duplications and gene expression divergence: a view from plants

(2012) Yupeng Wang et al.   Annals of the New York Academy of Sciences

A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts

(2012) Christopher Carrie et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

The family of Deg/HtrA proteases in plants

(2012) Holger Schuhmann et al.   BMC PLANT BIOLOGY

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

(2012) Sandra K. Tanz et al.   NUCLEIC ACIDS RESEARCH

Isolation and Proteomic Characterization of the Arabidopsis Golgi Defines Functional and Novel Components Involved in Plant Cell Wall Biosynthesis

(2012) H. T. Parsons et al.   PLANT PHYSIOLOGY

Birth, death and subfunctionalization in the Arabidopsis genome

(2012) Matthew T. Rutter et al.   TRENDS IN PLANT SCIENCE

A new principle of oligomerization of plant DEG7 protease based on interactions of degenerated protease domains

(2011) Holger Schuhmann et al.   BIOCHEMICAL JOURNAL

Recombinant Deg/HtrA proteases fromSynechocystissp. PCC 6803 differ in substrate specificity, biochemical characteristics and mechanism

(2011) Pitter F. Huesgen et al.   BIOCHEMICAL JOURNAL

Deg proteases and their role in protein quality control and processing in different subcellular compartments of the plant cell

(2011) Holger Schuhmann et al.   PHYSIOLOGIA PLANTARUM

The Interconversion of UDP-Arabinopyranose and UDP-Arabinofuranose Is Indispensable for Plant Development inArabidopsis

(2011) Carsten Rautengarten et al.   PLANT CELL

Both the Hydrophobicity and a Positively Charged Region Flanking the C-Terminal Region of the Transmembrane Domain of Signal-Anchored Proteins Play Critical Roles in Determining Their Targeting Specificity to the Endoplasmic Reticulum or Endosymbiotic Organelles inArabidopsisCells

(2011) Junho Lee et al.   PLANT CELL

A subcellular localization compendium of hydrogen peroxide-induced proteins

(2011) ANNELIES INZÉ et al.   PLANT CELL AND ENVIRONMENT

In-Depth Temporal Transcriptome Profiling Reveals a Crucial Developmental Switch with Roles for RNA Processing and Organelle Metabolism That Are Essential for Germination in Arabidopsis

(2011) R. Narsai et al.   PLANT PHYSIOLOGY

Integrative Identification of Arabidopsis Mitochondrial Proteome and Its Function Exploitation through Protein Interaction Network

(2011) Jian Cui et al.   PLoS One

Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity

(2011) S. Mintz-Oron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for Network Evolution in an Arabidopsis Interactome Map

(2011) et al.   SCIENCE

SLocX: predicting subcellular localization of Arabidopsis proteins leveraging gene expression data

(2011) Malgorzata Ryngajllo   Frontiers in Plant Science

Analysis of theArabidopsisCytosolic Proteome Highlights Subcellular Partitioning of Central Plant Metabolism

(2010) Jun Ito et al.   JOURNAL OF PROTEOME RESEARCH

AT_CHLORO, a Comprehensive Chloroplast Proteome Database with Subplastidial Localization and Curated Information on Envelope Proteins

(2010) Myriam Ferro et al.   MOLECULAR & CELLULAR PROTEOMICS

Megadalton Complexes in the Chloroplast Stroma ofArabidopsis thalianaCharacterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering

(2010) Paul Dominic B. Olinares et al.   MOLECULAR & CELLULAR PROTEOMICS

YLoc—an interpretable web server for predicting subcellular localization

(2010) Sebastian Briesemeister et al.   NUCLEIC ACIDS RESEARCH

AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis

(2010) C. G. de Oliveira Dal'Molin et al.   PLANT PHYSIOLOGY

The Stromal Chloroplast Deg7 Protease Participates in the Repair of Photosystem II after Photoinhibition in Arabidopsis

(2010) X. Sun et al.   PLANT PHYSIOLOGY

Post Analysis Data Acquisition for the Iterative MS/MS Sampling of Proteomics Mixtures

(2009) Michael R. Hoopmann et al.   JOURNAL OF PROTEOME RESEARCH

Defining the Mitochondrial Stress Response in Arabidopsis thaliana

(2009) Olivier Van Aken et al.   Molecular Plant

Exploring the Function-Location Nexus: Using Multiple Lines of Evidence in Defining the Subcellular Location of Plant Proteins

(2009) A. H. Millar et al.   PLANT CELL

Systematic Localization of the Arabidopsis Core Cell Cycle Proteins Reveals Novel Cell Division Complexes

(2009) J. Boruc et al.   PLANT PHYSIOLOGY

In-Depth Proteome Analysis of Arabidopsis Leaf Peroxisomes Combined with in Vivo Subcellular Targeting Verification Indicates Novel Metabolic and Regulatory Functions of Peroxisomes

(2009) S. Reumann et al.   PLANT PHYSIOLOGY

Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs

(2009) S. Kosugi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nuclear regulators with a second home in organelles

(2009) Kirsten Krause et al.   TRENDS IN PLANT SCIENCE

Type II NAD(P)H dehydrogenases are targeted to mitochondria and chloroplasts or peroxisomes inArabidopsis thaliana

(2008) Chris Carrie et al.   FEBS LETTERS

Approaches to defining dual-targeted proteins in Arabidopsis

(2008) Chris Carrie et al.   PLANT JOURNAL

The DEG15 Serine Protease Cleaves Peroxisomal Targeting Signal 2-Containing Proteins in Arabidopsis

(2008) H. Schuhmann et al.   PLANT PHYSIOLOGY

Peroxisomal Localization of Arabidopsis Isopentenyl Diphosphate Isomerases Suggests That Part of the Plant Isoprenoid Mevalonic Acid Pathway Is Compartmentalized to Peroxisomes

(2008) M. Sapir-Mir et al.   PLANT PHYSIOLOGY

Novel Proteins, Putative Membrane Transporters, and an Integrated Metabolic Network Are Revealed by Quantitative Proteomic Analysis of Arabidopsis Cell Culture Peroxisomes

(2008) H. Eubel et al.   PLANT PHYSIOLOGY

Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics

(2008) K. Baerenfaller et al.   SCIENCE