SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity

(2011) S. Mintz-Oron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for Network Evolution in an Arabidopsis Interactome Map

(2011) et al.   SCIENCE

SLocX: predicting subcellular localization of Arabidopsis proteins leveraging gene expression data

(2011) Malgorzata Ryngajllo   Frontiers in Plant Science

AT_CHLORO, a Comprehensive Chloroplast Proteome Database with Subplastidial Localization and Curated Information on Envelope Proteins

(2010) Myriam Ferro et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

(2010) Jelle Van Leene et al.   Molecular Systems Biology

YLoc—an interpretable web server for predicting subcellular localization

(2010) Sebastian Briesemeister et al.   NUCLEIC ACIDS RESEARCH

AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis

(2010) C. G. de Oliveira Dal'Molin et al.   PLANT PHYSIOLOGY

MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data

(2010) H. J. Joshi et al.   PLANT PHYSIOLOGY

Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization

(2010) Kuo-Chen Chou et al.   PLoS One

MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction

(2009) Torsten Blum et al.   BMC BIOINFORMATICS

Prediction of dual protein targeting to plant organelles

(2009) Jan Mitschke et al.   NEW PHYTOLOGIST

Exploring the Function-Location Nexus: Using Multiple Lines of Evidence in Defining the Subcellular Location of Plant Proteins

(2009) A. H. Millar et al.   PLANT CELL

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program

(2008) Michel Schneider et al.   Journal of Proteomics

Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins

(2008) Bing Niu et al.   MOLECULAR DIVERSITY