Processing ribonucleotides incorporated during eukaryotic DNA replication
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Title
Processing ribonucleotides incorporated during eukaryotic DNA replication
Authors
Keywords
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Journal
NATURE REVIEWS MOLECULAR CELL BIOLOGY
Volume 17, Issue 6, Pages 350-363
Publisher
Springer Nature
Online
2016-04-20
DOI
10.1038/nrm.2016.37
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Note: Only part of the references are listed.- Eukaryotic Mismatch Repair in Relation to DNA Replication
- (2015) Thomas A. Kunkel et al. Annual Review of Genetics
- Unlocking the steric gate of DNA polymerase η leads to increased genomic instability in Saccharomyces cerevisiae
- (2015) Katherine A. Donigan et al. DNA REPAIR
- Alternative solutions and new scenarios for translesion DNA synthesis by human PrimPol
- (2015) María I. Martínez-Jiménez et al. DNA REPAIR
- Error-free and mutagenic processing of topoisomerase 1-provoked damage at genomic ribonucleotides
- (2015) J. L. Sparks et al. EMBO JOURNAL
- Stimulation of Chromosomal Rearrangements by Ribonucleotides
- (2015) H. N. Conover et al. GENETICS
- Elevated Genome-Wide Instability in Yeast Mutants Lacking RNase H Activity
- (2015) K. O'Connell et al. GENETICS
- Analysis of Ribonucleotide Removal from DNA by Human Nucleotide Excision Repair
- (2015) Laura A. Lindsey-Boltz et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Topoisomerase I Alone Is Sufficient to Produce Short DNA Deletions and Can Also Reverse Nicks at Ribonucleotide Sites
- (2015) Shar-yin Naomi Huang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Formation and Repair of Mismatches Containing Ribonucleotides and Oxidized Bases at Repeated DNA Sequences
- (2015) Piera Cilli et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A Major Role of DNA Polymerase δ in Replication of Both the Leading and Lagging DNA Strands
- (2015) Robert E. Johnson et al. MOLECULAR CELL
- Lagging-strand replication shapes the mutational landscape of the genome
- (2015) Martin A. M. Reijns et al. NATURE
- Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA
- (2015) Kyung Duk Koh et al. NATURE METHODS
- Genome-wide mapping of embedded ribonucleotides and other noncanonical nucleotides using emRiboSeq and EndoSeq
- (2015) James Ding et al. Nature Protocols
- R loops: new modulators of genome dynamics and function
- (2015) José M. Santos-Pereira et al. NATURE REVIEWS GENETICS
- Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation
- (2015) Anders R Clausen et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A global profile of replicative polymerase usage
- (2015) Yasukazu Daigaku et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Evidence that processing of ribonucleotides in DNA by topoisomerase 1 is leading-strand specific
- (2015) Jessica S Williams et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Ribonucleotides in DNA: hidden in plain sight
- (2015) Sue Jinks-Robertson et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Topoisomerase 1-dependent deletions initiated by incision at ribonucleotides are biased to the non-transcribed strand of a highly activated reporter
- (2015) Jang-Eun Cho et al. NUCLEIC ACIDS RESEARCH
- TheSaccharomyces cerevisiaeDna2 can function as a sole nuclease in the processing of Okazaki fragments in DNA replication
- (2015) Maryna Levikova et al. NUCLEIC ACIDS RESEARCH
- Genome-wide analysis of the specificity and mechanisms of replication infidelity driven by imbalanced dNTP pools
- (2015) Danielle L. Watt et al. NUCLEIC ACIDS RESEARCH
- Colon cancer-associated mutator DNA polymerase δ variant causes expansion of dNTP pools increasing its own infidelity
- (2015) Tony M. Mertz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- dNTP pool levels modulate mutator phenotypes of error-prone DNA polymerase ε variants
- (2015) Lindsey N. Williams et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular underpinnings of Aprataxin RNA/DNA deadenylase function and dysfunction in neurological disease
- (2015) Matthew J. Schellenberg et al. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY
- Breaking bad: R-loops and genome integrity
- (2015) Julie Sollier et al. TRENDS IN CELL BIOLOGY
- Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation
- (2015) Anders R Clausen et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A global profile of replicative polymerase usage
- (2015) Yasukazu Daigaku et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Evidence that processing of ribonucleotides in DNA by topoisomerase 1 is leading-strand specific
- (2015) Jessica S Williams et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Ribonucleotides in DNA: hidden in plain sight
- (2015) Sue Jinks-Robertson et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Slow mitochondrial repair of 5′-AMP renders mtDNA susceptible to damage in APTX deficient cells
- (2015) Mansour Akbari et al. Scientific Reports
- Replicative DNA Polymerase δ but Not ε Proofreads Errors in Cis and in Trans
- (2015) Carrie L. Flood et al. PLoS Genetics
- Ribonucleotide triggered DNA damage and RNA-DNA damage responses
- (2015) Bret D Wallace et al. RNA Biology
- Transcription-Associated Mutagenesis
- (2014) Sue Jinks-Robertson et al. Annual Review of Genetics
- Ribonuclease H2 in health and disease
- (2014) Martin A.M. Reijns et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Ribonucleotides in DNA: Origins, repair and consequences
- (2014) Jessica S. Williams et al. DNA REPAIR
- Ribonucleotide incorporation by yeast DNA polymerase ζ
- (2014) Alena V. Makarova et al. DNA REPAIR
- Recognition and repair of chemically heterogeneous structures at DNA ends
- (2014) Sara N. Andres et al. ENVIRONMENTAL AND MOLECULAR MUTAGENESIS
- Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication
- (2014) Eve Shinbrot et al. GENOME RESEARCH
- Reduction of hRNase H2 activity in Aicardi–Goutières syndrome cells leads to replication stress and genome instability
- (2014) Sara Pizzi et al. HUMAN MOLECULAR GENETICS
- Altered spatio-temporal dynamics of RNase H2 complex assembly at replication and repair sites in Aicardi–Goutières syndrome
- (2014) Barbara Kind et al. HUMAN MOLECULAR GENETICS
- The Steric Gate of DNA Polymerase ι Regulates Ribonucleotide Incorporation and Deoxyribonucleotide Fidelity
- (2014) Katherine A. Donigan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Proteolytic Degradation of Topoisomerase II (Top2) Enables the Processing of Top2·DNA and Top2·RNA Covalent Complexes by Tyrosyl-DNA-Phosphodiesterase 2 (TDP2)
- (2014) Rui Gao et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Defective removal of ribonucleotides from DNA promotes systemic autoimmunity
- (2014) Claudia Günther et al. JOURNAL OF CLINICAL INVESTIGATION
- A Saccharomyces cerevisiae RNase H2 Interaction Network Functions To Suppress Genome Instability
- (2014) S. Allen-Soltero et al. MOLECULAR AND CELLULAR BIOLOGY
- RNA intrusions change DNA elastic properties and structure
- (2014) Hsiang-Chih Chiu et al. Nanoscale
- Avoidance of ribonucleotide-induced mutations by RNase H2 and Srs2-Exo1 mechanisms
- (2014) Catherine J. Potenski et al. NATURE
- ATP insertion opposite 8-oxo-deoxyguanosine by Pol4 mediates error-free tolerance in Schizosaccharomyces pombe
- (2014) Guillermo Sastre-Moreno et al. NUCLEIC ACIDS RESEARCH
- How the misincorporation of ribonucleotides into genomic DNA can be both harmful and helpful to cells
- (2014) Catherine J. Potenski et al. NUCLEIC ACIDS RESEARCH
- Ribose--An Internal Threat to DNA
- (2014) K. W. Caldecott SCIENCE
- Replication-induced supercoiling: a neglected DNA transaction regulator?
- (2014) Haojie Yu et al. TRENDS IN BIOCHEMICAL SCIENCES
- Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics
- (2014) Heidi S. Alvey et al. Nature Communications
- Increased and Imbalanced dNTP Pools Symmetrically Promote Both Leading and Lagging Strand Replication Infidelity
- (2014) Robert J. Buckland et al. PLoS Genetics
- Two distinct mechanisms of Topoisomerase 1-dependent mutagenesis in yeast
- (2013) Jang-Eun Cho et al. DNA REPAIR
- Ribonucleotides as nucleotide excision repair substrates
- (2013) Yuqin Cai et al. DNA REPAIR
- hPrimpol1/CCDC111 is a human DNA primase-polymerase required for the maintenance of genome integrity
- (2013) Li Wan et al. EMBO REPORTS
- DNA Repair Mechanisms and the Bypass of DNA Damage in Saccharomyces cerevisiae
- (2013) S. Boiteux et al. GENETICS
- DNA polymerase ɛ and δ exonuclease domain mutations in endometrial cancer
- (2013) David N. Church et al. HUMAN MOLECULAR GENETICS
- PrimPol Bypasses UV Photoproducts during Eukaryotic Chromosomal DNA Replication
- (2013) Julie Bianchi et al. MOLECULAR CELL
- PrimPol, an Archaic Primase/Polymerase Operating in Human Cells
- (2013) Sara García-Gómez et al. MOLECULAR CELL
- Topoisomerase 1-Mediated Removal of Ribonucleotides from Nascent Leading-Strand DNA
- (2013) Jessica S. Williams et al. MOLECULAR CELL
- Ribonucleotides Misincorporated into DNA Act as Strand-Discrimination Signals in Eukaryotic Mismatch Repair
- (2013) Medini Manohar Ghodgaonkar et al. MOLECULAR CELL
- Ribonucleotides Are Signals for Mismatch Repair of Leading-Strand Replication Errors
- (2013) Scott A. Lujan et al. MOLECULAR CELL
- Integrated genomic characterization of endometrial carcinoma
- (2013) Gad Getz et al. NATURE
- Aprataxin resolves adenylated RNA–DNA junctions to maintain genome integrity
- (2013) Percy Tumbale et al. NATURE
- Repriming of DNA synthesis at stalled replication forks by human PrimPol
- (2013) Silvana Mourón et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- RNase H2 roles in genome integrity revealed by unlinking its activities
- (2013) Hyongi Chon et al. NUCLEIC ACIDS RESEARCH
- Structure-function analysis of ribonucleotide bypass by B family DNA replicases
- (2013) A. R. Clausen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Break-Induced DNA Replication
- (2013) R. P. Anand et al. Cold Spring Harbor Perspectives in Biology
- Rescuing Stalled or Damaged Replication Forks
- (2013) J. T. P. Yeeles et al. Cold Spring Harbor Perspectives in Biology
- Okazaki Fragment Metabolism
- (2013) L. Balakrishnan et al. Cold Spring Harbor Perspectives in Biology
- Translesion DNA Polymerases
- (2013) M. F. Goodman et al. Cold Spring Harbor Perspectives in Biology
- Removal of Misincorporated Ribonucleotides from Prokaryotic Genomes: An Unexpected Role for Nucleotide Excision Repair
- (2013) Alexandra Vaisman et al. PLoS Genetics
- Solution Structure of the Dickerson DNA Dodecamer Containing a Single Ribonucleotide
- (2012) Eugene F. DeRose et al. BIOCHEMISTRY
- Enzymatic Removal of Ribonucleotides from DNA Is Essential for Mammalian Genome Integrity and Development
- (2012) Martin A.M. Reijns et al. CELL
- Proofreading of ribonucleotides inserted into DNA by yeast DNA polymerase ɛ
- (2012) Jessica S. Williams et al. DNA REPAIR
- Transcriptional responses to loss of RNase H2 in Saccharomyces cerevisiae
- (2012) Mercedes E. Arana et al. DNA REPAIR
- Ribonucleotide incorporation, proofreading and bypass by human DNA polymerase δ
- (2012) Anders R. Clausen et al. DNA REPAIR
- Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype
- (2012) Marta B Davidson et al. EMBO JOURNAL
- Structural Factors That Determine Selectivity of a High Fidelity DNA Polymerase for Deoxy-, Dideoxy-, and Ribonucleotides
- (2012) Weina Wang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Human DNA Polymerase ϵ Is Able to Efficiently Extend from Multiple Consecutive Ribonucleotides
- (2012) A. Yasemin Göksenin et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Frequent Incorporation of Ribonucleotides during HIV-1 Reverse Transcription and Their Attenuated Repair in Macrophages
- (2012) Edward M. Kennedy et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Mammalian RNase H2 removes ribonucleotides from DNA to maintain genome integrity
- (2012) Bjoern Hiller et al. JOURNAL OF EXPERIMENTAL MEDICINE
- RNase H2-Initiated Ribonucleotide Excision Repair
- (2012) Justin L. Sparks et al. MOLECULAR CELL
- RNase H and Postreplication Repair Protect Cells from Ribonucleotides Incorporated in DNA
- (2012) Federico Lazzaro et al. MOLECULAR CELL
- Germline mutations affecting the proofreading domains of POLE and POLD1 predispose to colorectal adenomas and carcinomas
- (2012) Claire Palles et al. NATURE GENETICS
- The catalytic cycle for ribonucleotide incorporation by human DNA Pol λ
- (2012) Rajendrakumar A. Gosavi et al. NUCLEIC ACIDS RESEARCH
- Causes and consequences of ribonucleotide incorporation into nuclear DNA
- (2012) Jacob Z. Dalgaard TRENDS IN GENETICS
- Mismatch Repair Balances Leading and Lagging Strand DNA Replication Fidelity
- (2012) Scott A. Lujan et al. PLoS Genetics
- Unlocking the Sugar “Steric Gate” of DNA Polymerases
- (2011) Jessica A. Brown et al. BIOCHEMISTRY
- Replication of ribonucleotide-containing DNA templates by yeast replicative polymerases
- (2011) Danielle L. Watt et al. DNA REPAIR
- Mismatch repair-independent tandem repeat sequence instability resulting from ribonucleotide incorporation by DNA polymerase ɛ
- (2011) Alan B. Clark et al. DNA REPAIR
- Timing and spacing of ubiquitin-dependent DNA damage bypass
- (2011) Helle D. Ulrich FEBS LETTERS
- Molecular Insights into DNA Polymerase Deterrents for Ribonucleotide Insertion
- (2011) Nisha A. Cavanaugh et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Ribonucleotide Discrimination and Reverse Transcription by the Human Mitochondrial DNA Polymerase
- (2011) Rajesh Kasiviswanathan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- RNase H and Multiple RNA Biogenesis Factors Cooperate to Prevent RNA:DNA Hybrids from Generating Genome Instability
- (2011) Lamia Wahba et al. MOLECULAR CELL
- Epistasis analysis between homologous recombination genes in Saccharomyces cerevisiae identifies multiple repair pathways for Sgs1, Mus81-Mms4 and RNase H2
- (2011) Miki Ii et al. MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS
- Mispaired rNMPs in DNA are mutagenic and are targets of mismatch repair and RNases H
- (2011) Ying Shen et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- PCNA directs type 2 RNase H activity on DNA replication and repair substrates
- (2011) Doryen Bubeck et al. NUCLEIC ACIDS RESEARCH
- Mutagenic Processing of Ribonucleotides in DNA by Yeast Topoisomerase I
- (2011) N. Kim et al. SCIENCE
- Okazaki fragment maturation: nucleases take centre stage
- (2011) L. Zheng et al. Journal of Molecular Cell Biology
- Identification of a Novel Type of Spacer Element Required for Imprinting in Fission Yeast
- (2011) Suha Sayrac et al. PLoS Genetics
- The Major Roles of DNA Polymerases Epsilon and Delta at the Eukaryotic Replication Fork Are Evolutionarily Conserved
- (2011) Izumi Miyabe et al. PLoS Genetics
- The phosphoCTD-interacting domain of Topoisomerase I
- (2010) Jianhong Wu et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Dna2 on the road to Okazaki fragment processing and genome stability in eukaryotes
- (2010) Young-Hoon Kang et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Concurrent genetic alterations in DNA polymerase proofreading and mismatch repair in human colorectal cancer
- (2010) Rintaro Yoshida et al. EUROPEAN JOURNAL OF HUMAN GENETICS
- The Structural and Biochemical Characterization of Human RNase H2 Complex Reveals the Molecular Basis for Substrate Recognition and Aicardi-Goutières Syndrome Defects
- (2010) Małgorzata Figiel et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The Structure of the Human RNase H2 Complex Defines Key Interaction Interfaces Relevant to Enzyme Function and Human Disease
- (2010) Martin A. M. Reijns et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Crystal Structures of RNase H2 in Complex with Nucleic Acid Reveal the Mechanism of RNA-DNA Junction Recognition and Cleavage
- (2010) Monika P. Rychlik et al. MOLECULAR CELL
- Genome instability due to ribonucleotide incorporation into DNA
- (2010) Stephanie A Nick McElhinny et al. Nature Chemical Biology
- Highly mutagenic and severely imbalanced dNTP pools can escape detection by the S-phase checkpoint
- (2010) Dinesh Kumar et al. NUCLEIC ACIDS RESEARCH
- Mechanisms of mutagenesis in vivo due to imbalanced dNTP pools
- (2010) D. Kumar et al. NUCLEIC ACIDS RESEARCH
- Role for topoisomerase 1 in transcription-associated mutagenesis in yeast
- (2010) M. J. Lippert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Topoisomerase 1 provokes the formation of short deletions in repeated sequences upon high transcription in Saccharomyces cerevisiae
- (2010) T. Takahashi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases
- (2010) S. A. Nick McElhinny et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mechanism and evolution of DNA primases
- (2009) Robert D. Kuchta et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Ribonuclease H: the enzymes in eukaryotes
- (2009) Susana M. Cerritelli et al. FEBS Journal
- Quantitation of cellular deoxynucleoside triphosphates
- (2009) Paola Ferraro et al. NUCLEIC ACIDS RESEARCH
- Polymerase Dynamics at the Eukaryotic DNA Replication Fork
- (2008) Peter M. J. Burgers JOURNAL OF BIOLOGICAL CHEMISTRY
- Contributions of the two accessory subunits, RNASEH2B and RNASEH2C, to the activity and properties of the human RNase H2 complex
- (2008) Hyongi Chon et al. NUCLEIC ACIDS RESEARCH
- Dividing the workload at a eukaryotic replication fork
- (2008) Thomas A. Kunkel et al. TRENDS IN CELL BIOLOGY
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