Gut microbiota response to in vitro transit time variation is mediated by microbial growth rates, nutrient use efficiency and adaptation to in vivo transit time

Characterizing the mucin-degrading capacity of the human gut microbiota

(2022) Janiece S. Glover et al.   Scientific Reports

Advancing human gut microbiota research by considering gut transit time

(2022) Nicola Procházková et al.   GUT

The Gut Microbiome and Abiotic Factors as Potential Determinants of Postprandial Glucose Responses: A Single-Arm Meal Study

(2021) Nathalie Nestel et al.   Frontiers in Nutrition

Blue poo: impact of gut transit time on the gut microbiome using a novel marker

(2021) Francesco Asnicar et al.   GUT

Microbiome-encoded bile acid metabolism modulates colonic transit times

(2021) Naisi Li et al.   iScience

Temporal variability in quantitative human gut microbiome profiles and implications for clinical research

(2021) Doris Vandeputte et al.   Nature Communications

A Citrus Fruit Extract High in Polyphenols Beneficially Modulates the Gut Microbiota of Healthy Human Volunteers in a Validated In Vitro Model of the Colon

(2021) Mônica Maurer Sost et al.   Nutrients

Microbiota Composition and Metabolism Are Associated With Gut Function in Parkinson's Disease

(2020) Mihai S. Cirstea et al.   MOVEMENT DISORDERS

Stool frequency and form and gastrointestinal symptoms differ by day of the menstrual cycle in healthy adult women taking oral contraceptives: a prospective observational study

(2020) Taylor C. Judkins et al.   BMC Womens Health

Normative values for region‐specific colonic and gastrointestinal transit times in 111 healthy volunteers using the 3D‐Transit electromagnet tracking system: Influence of age, gender, and body mass index

(2019) Gursharan Kaur Nandhra et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Microbial succession during wheat bran fermentation and colonisation by human faecal microbiota as a result of niche diversification

(2019) Kim De Paepe et al.   ISME Journal

Distal colonic transit is linked to gut microbiota diversity and microbial fermentation in humans with slow colonic transit

(2019) Mattea Müller et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Differences in gut microbiota associated with age, sex, and stool consistency in healthy Japanese subjects

(2018) Tomohisa Takagi et al.   JOURNAL OF GASTROENTEROLOGY

Gastrointestinal Transit Time, Glucose Homeostasis and Metabolic Health: Modulation by Dietary Fibers

(2018) et al.   Nutrients

Richness and ecosystem development across faecal snapshots of the gut microbiota

(2018) Gwen Falony et al.   Nature Microbiology

Introducing insoluble wheat bran as a gut microbiota niche in an in vitro dynamic gut model stimulates propionate and butyrate production and induces colon region specific shifts in the luminal and mucosal microbial community

(2018) Kim De Paepe et al.   ENVIRONMENTAL MICROBIOLOGY

Inter-individual differences determine the outcome of wheat bran colonization by the human gut microbiome

(2017) Kim De Paepe et al.   ENVIRONMENTAL MICROBIOLOGY

Quantitative microbiome profiling links gut community variation to microbial load

(2017) Doris Vandeputte et al.   NATURE

Fate of chitin-glucan in the human gastrointestinal tract as studied in a dynamic gut simulator (SHIME®)

(2017) Massimo Marzorati et al.   Journal of Functional Foods

mixOmics: An R package for ‘omics feature selection and multiple data integration

(2017) Florian Rohart et al.   PLoS Computational Biology

Colonic Transit Time Is a Driven Force of the Gut Microbiota Composition and Metabolism: In Vitro Evidence

(2017) William Tottey et al.   Journal of Neurogastroenterology and Motility

Fiber-utilizing capacity varies in Prevotella- versus Bacteroides-dominated gut microbiota

(2017) Tingting Chen et al.   Scientific Reports

Dissolution profile of theophylline modified release tablets, using a biorelevant Dynamic Colon Model (DCM)

(2016) Konstantinos Stamatopoulos et al.   EUROPEAN JOURNAL OF PHARMACEUTICS AND BIOPHARMACEUTICS

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

(2016) Stefanía Magnúsdóttir et al.   NATURE BIOTECHNOLOGY

Regional gastrointestinal transit times in severe ulcerative colitis

(2016) A. M. Haase et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

(2016) Alexandra Zhernakova et al.   SCIENCE

Population-level analysis of gut microbiome variation

(2016) Gwen Falony et al.   SCIENCE

Measuring the biodiversity of microbial communities by flow cytometry

(2016) Ruben Props et al.   Methods in Ecology and Evolution

Impact of dietary resistant starch type 4 on human gut microbiota and immunometabolic functions

(2016) Bijaya Upadhyaya et al.   Scientific Reports

Revised Estimates for the Number of Human and Bacteria Cells in the Body

(2016) Ron Sender et al.   PLOS BIOLOGY

Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut

(2016) Henrik M. Roager et al.   Nature Microbiology

Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella

(2015) Petia Kovatcheva-Datchary et al.   Cell Metabolism

Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates

(2015) Doris Vandeputte et al.   GUT

Development of human colonic microbiota in the computer-controlled dynamic SIMulator of the GastroIntestinal tract SIMGI

(2015) Elvira Barroso et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria

(2014) Conor J. Meehan et al.   Genome Biology and Evolution

The Impact of Diet and Lifestyle on Gut Microbiota and Human Health

(2014) Michael Conlon et al.   Nutrients

Routine bacterial analysis with automated flow cytometry

(2013) Sam Van Nevel et al.   JOURNAL OF MICROBIOLOGICAL METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Novel Polyfermentor Intestinal Model (PolyFermS) for Controlled Ecological Studies: Validation and Effect of pH

(2013) Annina Zihler Berner et al.   PLoS One

Intestinal luminal nitrogen metabolism: Role of the gut microbiota and consequences for the host

(2012) Anne-Marie Davila et al.   PHARMACOLOGICAL RESEARCH

High-level dietary fibre up-regulates colonic fermentation and relative abundance of saccharolytic bacteria within the human faecal microbiota in vitro

(2011) Qing Shen et al.   EUROPEAN JOURNAL OF NUTRITION

Relevance of protein fermentation to gut health

(2011) Karen Windey et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylotypes related to Ruminococcus bromii are abundant in the large bowel of humans and increase in response to a diet high in resistant starch

(2008) Guy C.J. Abell et al.   FEMS MICROBIOLOGY ECOLOGY

Veillonella rogosae sp. nov., an anaerobic, Gram-negative coccus isolated from dental plaque

(2008) N. Arif et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY