Genetic diversity and evolutionary dynamics of the Omicron variant of SARS-CoV-2 in Morocco

Early assessment of the clinical severity of the SARS-CoV-2 omicron variant in South Africa: a data linkage study

(2022) Nicole Wolter et al.   LANCET

Methods Combining Genomic and Epidemiological Data in the Reconstruction of Transmission Trees: A Systematic Review

(2022) Hélène Duault et al.   Pathogens

Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic

(2022) Stephen W. Attwood et al.   NATURE REVIEWS GENETICS

Proteomic characterization of Omicron SARS-CoV-2 host response

(2022) Jianfeng Bao et al.   Cell Discovery

Report of SARS-CoV-2 BA.1 Lineage in Morocco

(2022) Safae El Mazouri et al.   Microbiology Resource Announcements

Omicron variant (B.1.1.529) and its sublineages: What do we know so far amid the emergence of recombinant variants of SARS-CoV-2?

(2022) Manish Dhawan et al.   BIOMEDICINE & PHARMACOTHERAPY

Computational modeling of the effect of five mutations on the structure of the ACE2 receptor and their correlation with infectivity and virulence of some emerged variants of SARS-CoV-2 suggests mechanisms of binding affinity dysregulation

(2022) J.A. Rodriguez et al.   CHEMICO-BIOLOGICAL INTERACTIONS

Bioinformatics analysis of the s2m mutations within the SARS‐CoV‐2 Omicron lineages

(2022) Caleb J. Frye et al.   JOURNAL OF MEDICAL VIROLOGY

Further humoral immunity evasion of emerging SARS-CoV-2 BA.4 and BA.5 subvariants

(2022) Fanchong Jian et al.   LANCET INFECTIOUS DISEASES

Phylogeography and genomic analysis of SARS-CoV-2 delta variant in Morocco

(2022) Safae El Mazouri et al.   Journal of Infection in Developing Countries

Enhanced neutralization resistance of SARS-CoV-2 Omicron subvariants BQ.1, BQ.1.1, BA.4.6, BF.7, and BA.2.75.2

(2022) Panke Qu et al.   Cell Host & Microbe

Delta SARS-CoV-2 variant is entirely substituted by the omicron variant during the fifth COVID-19 wave in Attica region

(2022) Aikaterini Galani et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comprehensive mapping of mutations in the SARS-CoV-2 receptor-binding domain that affect recognition by polyclonal human plasma antibodies

(2021) Allison J. Greaney et al.   Cell Host & Microbe

mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants

(2021) Zijun Wang et al.   NATURE

The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology

(2021) Bas B. Oude Munnink et al.   NATURE MEDICINE

SARS-CoV-2 variant prediction and antiviral drug design are enabled by RBD in vitro evolution

(2021) Jiří Zahradník et al.   Nature Microbiology

Susceptibilities of Human ACE2 Genetic Variants in Coronavirus Infection

(2021) Wenlin Ren et al.   JOURNAL OF VIROLOGY

Highly conserved s2m element of SARS-CoV-2 dimerizes via a kissing complex and interacts with host miRNA-1307-3p

(2021) Joshua A Imperatore et al.   NUCLEIC ACIDS RESEARCH

A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

(2021) Eduan Wilkinson et al.   SCIENCE

IDbSV: An Open-Access Repository for Monitoring SARS-CoV-2 Variations and Evolution

(2021) Abdelmounim Essabbar et al.   Frontiers in Medicine

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

(2020) Andrew Rambaut et al.   Nature Microbiology

Genomic Diversity and Hotspot Mutations in 30,983 SARS-CoV-2 Genomes: Moving Toward a Universal Vaccine for the “Confined Virus”?

(2020) Tarek Alouane et al.   Pathogens

Nextstrain: real-time tracking of pathogen evolution

(2018) James Hadfield et al.   BIOINFORMATICS

Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler

(2016) Samuel S. Shepard et al.   BMC GENOMICS

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Extended Newick: it is time for a standard representation of phylogenetic networks

(2009) Gabriel Cardona et al.   BMC BIOINFORMATICS