Delta SARS-CoV-2 variant is entirely substituted by the omicron variant during the fifth COVID-19 wave in Attica region

Tracking cryptic SARS-CoV-2 lineages detected in NYC wastewater

(2022) Davida S. Smyth et al.   Nature Communications

Notes from the Field: Early Evidence of the SARS-CoV-2 B.1.1.529 (Omicron) Variant in Community Wastewater — United States, November–December 2021

(2022) Amy E. Kirby et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

Genome Sequencing of Wastewater Confirms the Arrival of the SARS-CoV-2 Omicron Variant at Frankfurt Airport but Limited Spread in the City of Frankfurt, Germany, in November 2021

(2022) Shelesh Agrawal et al.   Microbiology Resource Announcements

Covid-19 Vaccine Effectiveness against the Omicron (B.1.1.529) Variant

(2022) Nick Andrews et al.   NEW ENGLAND JOURNAL OF MEDICINE

National Scale Real-Time Surveillance of SARS-CoV-2 Variants Dynamics by Wastewater Monitoring in Israel

(2022) Itay Bar-Or et al.   Viruses-Basel

The rapid spread of SARS-COV-2 Omicron variant in Italy reflected early through wastewater surveillance

(2022) G. La Rosa et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Rapid transition between SARS-CoV-2 variants of concern Delta and Omicron detected by monitoring municipal wastewater from three Canadian cities

(2022) Femi F. Oloye et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Novel Nested-Seq Approach for SARS-CoV-2 Real-Time Epidemiology and In-Depth Mutational Profiling in Wastewater

(2021) Margaritis Avgeris et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Quantitative SARS-CoV-2 Alpha Variant B.1.1.7 Tracking in Wastewater by Allele-Specific RT-qPCR

(2021) Wei Lin Lee et al.   Environmental Science & Technology Letters

Limitation of Screening of Different Variants of SARS-CoV-2 by RT-PCR

(2021) Agathe Boudet et al.   Diagnostics

Direct RT-qPCR assay for SARS-CoV-2 variants of concern (Alpha, B.1.1.7 and Beta, B.1.351) detection and quantification in wastewater

(2021) Karin Yaniv et al.   ENVIRONMENTAL RESEARCH

SARS-CoV-2 wastewater surveillance data can predict hospitalizations and ICU admissions

(2021) Aikaterini Galani et al.   SCIENCE OF THE TOTAL ENVIRONMENT

SARS-CoV-2 variant detection at a university dormitory using wastewater genomic tools

(2021) Van Vo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Droplet digital RT-PCR to detect SARS-CoV-2 signature mutations of variants of concern in wastewater

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Patterns of pharmaceuticals use during the first wave of COVID-19 pandemic in Athens, Greece as revealed by wastewater-based epidemiology

(2021) Aikaterini Galani et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance

(2021) Warish Ahmed et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Monitoring COVID‐19 through SARS‐CoV‐2 quantification in wastewater: progress, challenges and prospects

(2021) José Alhama et al.   Microbial Biotechnology

Omicron variant (B.1.1.529) of SARS-CoV-2: Mutation, infectivity, transmission, and vaccine resistance

(2021) Shi-Yan Ren et al.   World Journal of Clinical Cases

Measurement of SARS-CoV-2 RNA in wastewater tracks community infection dynamics

(2020) Jordan Peccia et al.   NATURE BIOTECHNOLOGY

Tracking virus outbreaks in the twenty-first century

(2018) Nathan D. Grubaugh et al.   Nature Microbiology

Reflection of Socioeconomic Changes in Wastewater: Licit and Illicit Drug Use Patterns

(2016) Nikolaos S. Thomaidis et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Measuring and mitigating inhibition during quantitative real time PCR analysis of viral nucleic acid extracts from large-volume environmental water samples

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Fast and accurate short read alignment with Burrows-Wheeler transform

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