IDbSV: An Open-Access Repository for Monitoring SARS-CoV-2 Variations and Evolution

In Silico Investigation of the New UK (B.1.1.7) and South African (501Y.V2) SARS-CoV-2 Variants with a Focus at the ACE2–Spike RBD Interface

(2021) Bruno O. Villoutreix et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The origin and early spread of SARS-CoV-2 in Europe

(2021) Sarah A. Nadeau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IPD 2.0: To derive insights from an evolving SARS-CoV-2 genome

(2021) Sanket Desai et al.   BMC BIOINFORMATICS

COVID-19 Outbreak Associated with a SARS-CoV-2 P.1 Lineage in a Long-Term Care Home after Implementation of a Vaccination Program – Ontario, April-May 2021

(2021) Chantal Williams et al.   CLINICAL INFECTIOUS DISEASES

Exploring SARS-COV-2 structural proteins to design a multi-epitope vaccine using immunoinformatics approach: An in silico study

(2021) Samira Sanami et al.   COMPUTERS IN BIOLOGY AND MEDICINE

The origins and potential future of SARS-CoV-2 variants of concern in the evolving COVID-19 pandemic

(2021) Sarah P. Otto et al.   CURRENT BIOLOGY

An interactive web-based dashboard to track COVID-19 in real time

(2020) Ensheng Dong et al.   LANCET INFECTIOUS DISEASES

Characterization of the receptor-binding domain (RBD) of 2019 novel coronavirus: implication for development of RBD protein as a viral attachment inhibitor and vaccine

(2020) Wanbo Tai et al.   Cellular & Molecular Immunology

SARS-CoV-2/COVID-19: Viral Genomics, Epidemiology, Vaccines, and Therapeutic Interventions

(2020) Mohammed Uddin et al.   Viruses-Basel

Variant analysis of SARS-CoV-2 genomes

(2020) Takahiko Koyama et al.   BULLETIN OF THE WORLD HEALTH ORGANIZATION

Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus

(2020) Bette Korber et al.   CELL

Geographic and Genomic Distribution of SARS-CoV-2 Mutations

(2020) Daniele Mercatelli et al.   Frontiers in Microbiology

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

(2020) Andrew Rambaut et al.   Nature Microbiology

CoV-Seq, a New Tool for SARS-CoV-2 Genome Analysis and Visualization: Development and Usability Study

(2020) Boxiang Liu et al.   JOURNAL OF MEDICAL INTERNET RESEARCH

ViruSurf: an integrated database to investigate viral sequences

(2020) Arif Canakoglu et al.   NUCLEIC ACIDS RESEARCH

GESS: a database of global evaluation of SARS-CoV-2/hCoV-19 sequences

(2020) Shuyi Fang et al.   NUCLEIC ACIDS RESEARCH

Genomic Diversity and Hotspot Mutations in 30,983 SARS-CoV-2 Genomes: Moving Toward a Universal Vaccine for the “Confined Virus”?

(2020) Tarek Alouane et al.   Pathogens

Coronapp : A web application to annotate and monitor SARS‐CoV‐2 mutations

(2020) Daniele Mercatelli et al.   JOURNAL OF MEDICAL VIROLOGY

BioAider: An efficient tool for viral genome analysis and its application in tracing SARS-CoV-2 transmission

(2020) Zhi-Jian Zhou et al.   Sustainable Cities and Society

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Nextstrain: real-time tracking of pathogen evolution

(2018) James Hadfield et al.   BIOINFORMATICS

GISAID: Global initiative on sharing all influenza data – from vision to reality

(2017) Yuelong Shu et al.   Eurosurveillance

RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence

(2016) Yinghong Xiao et al.   Cell Host & Microbe

HGVS Recommendations for the Description of Sequence Variants: 2016 Update

(2016) Johan T. den Dunnen et al.   HUMAN MUTATION

Pluronic-attached polyamidoamine dendrimer conjugates overcome drug resistance in breast cancer

(2016) Meng Wang et al.   Nanomedicine

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

ViPR: an open bioinformatics database and analysis resource for virology research

(2011) Brett E. Pickett et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS