Genomic Diversity and Hotspot Mutations in 30,983 SARS-CoV-2 Genomes: Moving Toward a Universal Vaccine for the “Confined Virus”?

Genome Composition and Divergence of the Novel Coronavirus (2019-nCoV) Originating in China

(2020) Aiping Wu et al.   Cell Host & Microbe

A Novel Coronavirus from Patients with Pneumonia in China, 2019

(2020) Na Zhu et al.   NEW ENGLAND JOURNAL OF MEDICINE

Characterization of the receptor-binding domain (RBD) of 2019 novel coronavirus: implication for development of RBD protein as a viral attachment inhibitor and vaccine

(2020) Wanbo Tai et al.   Cellular & Molecular Immunology

The SARS-CoV-2 epidemic in Zimbabwe: Quo vadis?

(2020) Leolin Katsidzira et al.   CLINICAL INFECTIOUS DISEASES

Clinical, molecular and epidemiological characterization of the SARS-CoV2 virus and the Coronavirus disease 2019 (COVID-19), a comprehensive literature review

(2020) Esteban Ortiz-Prado et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe

(2020) Paola Stefanelli et al.   Eurosurveillance

SARS-CoV-2 Vaccines: Status Report

(2020) Fatima Amanat et al.   IMMUNITY

A Review of SARS-CoV-2 and the Ongoing Clinical Trials

(2020) Yung-Fang Tu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Bioinformatic prediction of potential T cell epitopes for SARS-Cov-2

(2020) Kazuma Kiyotani et al.   JOURNAL OF HUMAN GENETICS

Genetic variants and source of introduction of SARS‐CoV‐2 in South America

(2020) Julio A. Poterico et al.   JOURNAL OF MEDICAL VIROLOGY

Structural basis of receptor recognition by SARS-CoV-2

(2020) Jian Shang et al.   NATURE

The pandemic pipeline

(2020) John Hodgson   NATURE BIOTECHNOLOGY

The COVID-19 vaccine development landscape

(2020) Tung Thanh Le et al.   NATURE REVIEWS DRUG DISCOVERY

World Health Organization declares global emergency: A review of the 2019 novel coronavirus (COVID-19)

(2020) Catrin Sohrabi et al.   International Journal of Surgery

Research and Development on Therapeutic Agents and Vaccines for COVID-19 and Related Human Coronavirus Diseases

(2020) Cynthia Liu et al.   ACS Central Science

Emergence of SARS-CoV-2 through recombination and strong purifying selection

(2020) Xiaojun Li et al.   Science Advances

Computational Identification of Small Interfering RNA Targets in SARS-CoV-2

(2020) Wei Chen et al.   VIROLOGICA SINICA

Progress and Prospects on Vaccine Development against SARS-CoV-2

(2020) Jinyong Zhang et al.   Vaccines

Emergence of Drift Variants That May Affect COVID-19 Vaccine Development and Antibody Treatment

(2020) Takahiko Koyama et al.   Pathogens

Making Sense of Mutation: What D614G Means for the COVID-19 Pandemic Remains Unclear

(2020) Nathan D. Grubaugh et al.   CELL

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

(2020) Erik Alm et al.   Eurosurveillance

Mutations Strengthened SARS-CoV-2 Infectivity

(2020) Jiahui Chen et al.   JOURNAL OF MOLECULAR BIOLOGY

COVID-19 in Africa: the spread and response

(2020) Marguerite Massinga Loembé et al.   NATURE MEDICINE

A thermostable, closed SARS-CoV-2 spike protein trimer

(2020) Xiaoli Xiong et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

(2020) Xianding Deng et al.   SCIENCE

Prospects for RNAi Therapy of COVID-19

(2020) Hasan Uludağ et al.   Frontiers in Bioengineering and Biotechnology

Emerging genetic diversity among clinical isolates of SARS-CoV-2: Lessons for today

(2020) Javaid Ahmad Sheikh et al.   INFECTION GENETICS AND EVOLUTION

Low genetic diversity may be an Achilles heel of SARS-CoV-2

(2020) Jason W. Rausch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The emergence of SARS-CoV-2 in Europe and North America

(2020) Michael Worobey et al.   SCIENCE

A panel of human neutralizing mAbs targeting SARS-CoV-2 spike at multiple epitopes

(2020) Tal Noy-Porat et al.   Nature Communications

Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide

(2020) Sandra Isabel et al.   Scientific Reports

Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity

(2020) M. Rafiul Islam et al.   Scientific Reports

HawkDock: a web server to predict and analyze the protein–protein complex based on computational docking and MM/GBSA

(2019) Gaoqi Weng et al.   NUCLEIC ACIDS RESEARCH

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Nextstrain: real-time tracking of pathogen evolution

(2018) James Hadfield et al.   BIOINFORMATICS

GISAID: Global initiative on sharing all influenza data – from vision to reality

(2017) Yuelong Shu et al.   Eurosurveillance

Receptor-binding loops in alphacoronavirus adaptation and evolution

(2017) Alan H. M. Wong et al.   Nature Communications

Extremely High Mutation Rate of HIV-1 In Vivo

(2015) José M. Cuevas et al.   PLOS BIOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Escape from Human Monoclonal Antibody Neutralization Affects In Vitro and In Vivo Fitness of Severe Acute Respiratory Syndrome Coronavirus

(2010) Barry Rockx et al.   JOURNAL OF INFECTIOUS DISEASES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The spike protein of SARS-CoV — a target for vaccine and therapeutic development

(2009) Lanying Du et al.   NATURE REVIEWS MICROBIOLOGY

High frequency of hotspot mutations in core genes of Escherichia coli due to short-term positive selection

(2009) S. Chattopadhyay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA