Advances in genomic characterization of Urochloa humidicola: exploring polyploid inheritance and apomixis

Synthetic apomixis: the beginning of a new era

(2023) Jie Xiong et al.   CURRENT OPINION IN BIOTECHNOLOGY

Physical mapping of ribosomal DNA sites and genome size in polyploid series of Urochloa humidicola (Rendle) Morrone & Zuloaga (Poaceae)

(2023) Ana Gabriela Damasceno et al.   Botany Letters

A joint learning approach for genomic prediction in polyploid grasses

(2022) Alexandre Hild Aono et al.   Scientific Reports

Diverged subpopulations in tropical Urochloa (Brachiaria) forage species indicate a role for facultative apomixis and varying ploidy in their population structure and evolution

(2022) J Higgins et al.   ANNALS OF BOTANY

Learning to tango with four (or more): the molecular basis of adaptation to polyploid meiosis

(2022) Kirsten Bomblies   Plant Reproduction

The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population

(2021) Guilherme da Silva Pereira et al.   HEREDITY

Discovery of a major QTL for root-knot nematode (Meloidogyne incognita) resistance in cultivated sweetpotato (Ipomoea batatas)

(2021) Bonny Michael Oloka et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection in Tropical Forage Grasses: Current Status and Future Applications

(2021) Rosangela M. Simeão et al.   Frontiers in Plant Science

Apomixis: A Foresight from Genetic Mechanisms to Molecular Perspectives

(2021) C. Susmita et al.   BOTANICAL REVIEW

Using probabilistic genotypes in linkage analysis of polyploids

(2021) Yanlin Liao et al.   THEORETICAL AND APPLIED GENETICS

Haplotype reconstruction in connected tetraploid F1 populations

(2021) Chaozhi Zheng et al.   GENETICS

Complex polyploid and hybrid species in an apomictic and sexual tropical forage grass group: genomic composition and evolution in Urochloa (Brachiaria) species

(2021) Paulina Tomaszewska et al.   ANNALS OF BOTANY

An Overview of the Genetics and Genomics of the Urochloa Species Most Commonly Used in Pastures

(2021) Rebecca Caroline Ulbricht Ferreira et al.   Frontiers in Plant Science

A Semi-Automated SNP-Based Approach for Contaminant Identification in Biparental Polyploid Populations of Tropical Forage Grasses

(2021) Felipe Bitencourt Martins et al.   Frontiers in Plant Science

Meiosis in Polyploids and Implications for Genetic Mapping: A Review

(2021) Nina Reis Soares et al.   Genes

Features and applications of haplotypes in crop breeding

(2021) Javaid Akhter Bhat et al.   Communications Biology

High-Resolution Linkage Map With Allele Dosage Allows the Identification of Regions Governing Complex Traits and Apospory in Guinea Grass (Megathyrsus maximus)

(2020) Thamiris G. Deo et al.   Frontiers in Plant Science

A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction

(2020) Sarah E. Jensen et al.   Plant Genome

Selection based on meiotic behavior in Urochloa decumbens hybrids from non-shattered seed

(2020) Joana Neres da Cruz Baldissera et al.   Tropical Grasslands-Forrajes Tropicales

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

(2020) Sina Majidian et al.   BMC BIOINFORMATICS

Varietal variation and chromosome behaviour during meiosis in Solanum tuberosum

(2020) Anushree Choudhary et al.   HEREDITY

A new genome allows the identification of genes associated with natural variation in aluminium tolerance in Brachiaria grasses

(2020) Margaret Worthington et al.   JOURNAL OF EXPERIMENTAL BOTANY

Discovery of beneficial haplotypes for complex traits in maize landraces

(2020) Manfred Mayer et al.   Nature Communications

How to Become an Apomixis Model: The Multifaceted Case of Paspalum

(2020) Juan Pablo A. Ortiz et al.   Genes

Homoeologous Exchanges, Segmental Allopolyploidy, and Polyploid Genome Evolution

(2020) Annaliese S. Mason et al.   Frontiers in Genetics

Translocation of a parthenogenesis gene candidate to an alternate carrier chromosome in apomictic Brachiaria humidicola

(2019) Margaret Worthington et al.   BMC GENOMICS

Meiotic abnormalities affect genetic constitution and pollen viability in dicots from Indian cold deserts

(2019) Dalvir Kaur et al.   BMC PLANT BIOLOGY

Partitioning Apomixis Components to Understand and Utilize Gametophytic Apomixis

(2019) Pankaj Kaushal et al.   Frontiers in Plant Science

Genetic Mapping With Allele Dosage Information in Tetraploid Urochloa decumbens (Stapf) R. D. Webster Reveals Insights Into Spittlebug (Notozulia entreriana Berg) Resistance

(2019) Rebecca Caroline Ulbricht Ferreira et al.   Frontiers in Plant Science

Characterization of aneuploidy in interspecific hybrid between Urochloa ruziziensis (R. Germ. & Evrard) Crins and Urochloa decumbens (Stapf) R. D. Webster

(2019) Isabella de Campos Moraes et al.   MOLECULAR BIOLOGY REPORTS

Seed yield in red clover is associated with meiotic abnormalities and in tetraploid genotypes also with self-compatibility

(2019) Tim Vleugels et al.   EUPHYTICA

On the accuracy of genomic prediction models considering multi-trait and allele dosage in Urochloa spp. interspecific tetraploid hybrids

(2019) Filipe Inácio Matias et al.   MOLECULAR BREEDING

Genomic Selection with Allele Dosage in Panicum maximum Jacq.

(2019) Letícia A. de C. Lara et al.   G3-Genes Genomes Genetics

Comparative meiosis and cytogenomic analysis in euploid and aneuploid hybrids of Urochloa P. Beauv

(2019) Mara Jane da Rocha et al.   CHROMOSOME RESEARCH

Linkage Analysis and Haplotype Phasing in Experimental Autopolyploid Populations with High Ploidy Level Using Hidden Markov Models

(2019) Marcelo Mollinari et al.   G3-Genes Genomes Genetics

Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus Mapping

(2019) Marcelo Mollinari et al.   G3-Genes Genomes Genetics

polymapR—linkage analysis and genetic map construction from F1 populations of outcrossing polyploids

(2018) Peter M Bourke et al.   BIOINFORMATICS

Tools for Genetic Studies in Experimental Populations of Polyploids

(2018) Peter M. Bourke et al.   Frontiers in Plant Science

Research priorities for next-generation breeding of tropical forages in Brazil

(2018) Jorge Fernando Pereira et al.   Crop Breeding and Applied Biotechnology

A fully automated pipeline for quantitative genotype calling from next generation sequencing data in autopolyploids

(2018) Guilherme S. Pereira et al.   BMC BIOINFORMATICS

Preferential Homologous Chromosome Pairing in a Tetraploid Intergeneric Somatic Hybrid (Citrus reticulata + Poncirus trifoliata) Revealed by Molecular Marker Inheritance

(2018) Mourad Kamiri et al.   Frontiers in Plant Science

TetraploidSNPMap: Software for Linkage Analysis and QTL Mapping in Autotetraploid Populations Using SNP Dosage Data

(2017) Christine A. Hackett et al.   JOURNAL OF HEREDITY

The challenge of evolving stable polyploidy: could an increase in “crossover interference distance” play a central role?

(2016) Kirsten Bomblies et al.   CHROMOSOMA

A Parthenogenesis Gene Candidate and Evidence for Segmental Allopolyploidy in Apomictic Brachiaria decumbens

(2016) M. Worthington et al.   GENETICS

Evolutionary mysteries in meiosis

(2016) Thomas Lenormand et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A rapid marker ordering approach for high-density genetic linkage maps in experimental autotetraploid populations using multidimensional scaling

(2016) K. F. Preedy et al.   THEORETICAL AND APPLIED GENETICS

Evidence of Allopolyploidy in Urochloa humidicola Based on Cytological Analysis and Genetic Linkage Mapping

(2016) Bianca B. Z. Vigna et al.   PLoS One

Inheritance of Aposporous Apomixis in Inter-specific Hybrids Derived from Sexual and Apomictic

(2015) Patricia Mabel Aguilera et al.   CROP SCIENCE

Meiotic behavior of Brachiaria decumbens hybrids

(2015) V.F. Souza et al.   GENETICS AND MOLECULAR RESEARCH

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Genetic divergence among Brachiara humidicola (Rendle) Schweick hybrids evaluated in the Western Brazilian Amazon

(2014) Giselle Mariano Lessa de Assis et al.   Crop Breeding and Applied Biotechnology

Persistent whole-chromosome aneuploidy is generally associated with nascent allohexaploid wheat

(2013) Huakun Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The potential of genomics in plant systematics

(2013) Douglas E. Soltis et al.   TAXON

Control of meiotic recombination frequency in plant genomes

(2012) Ian R Henderson   CURRENT OPINION IN PLANT BIOLOGY

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

(2012) Gengyun Zhang et al.   NATURE BIOTECHNOLOGY

Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids

(2012) Oliver Serang et al.   PLoS One

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Evolution of the apomixis transmitting chromosome in Pennisetum

(2011) Yukio Akiyama et al.   BMC EVOLUTIONARY BIOLOGY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Complete Switchgrass Genetic Maps Reveal Subgenome Collinearity, Preferential Pairing and Multilocus Interactions

(2010) M. Okada et al.   GENETICS

Genetic diversity and population structure analysis of the tropical pasture grass Brachiaria humidicola based on microsatellites, cytogenetics, morphological traits, and geographical origin

(2010) L. Jungmann et al.   GENOME

Estimation of genome size in Brachiaria species

(2010) Genki Ishigaki et al.   GRASSLAND SCIENCE

Identification of a molecular marker linked to apomixis in Brachiaria humidicola (Poaceae)

(2010) C. Zorzatto et al.   PLANT BREEDING

Multilocus tetrasomic linkage analysis using hidden Markov chain model

(2010) L. J. Leach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Origin of a polyploid accession of Brachiaria humidicola (Poaceae: Panicoideae: Paniceae)

(2009) K.R. Boldrini et al.   GENETICS AND MOLECULAR RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Sequence Analysis of Bacterial Artificial Chromosome Clones from the Apospory-Specific Genomic Region of Pennisetum and Cenchrus

(2008) J. A. Conner et al.   PLANT PHYSIOLOGY