A Semi-Automated SNP-Based Approach for Contaminant Identification in Biparental Polyploid Populations of Tropical Forage Grasses
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Title
A Semi-Automated SNP-Based Approach for Contaminant Identification in Biparental Polyploid Populations of Tropical Forage Grasses
Authors
Keywords
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Journal
Frontiers in Plant Science
Volume 12, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2021-10-22
DOI
10.3389/fpls.2021.737919
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- (2021) Navid Yousefi-Mashouf et al. PLoS One
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- (2020) Rodrigo R. Amadeu et al. G3-Genes Genomes Genetics
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- (2019) Harry Kemble et al. Evolutionary Applications
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- (2019) Filipe Inácio Matias et al. MOLECULAR BREEDING
- Genetic data improve the assessment of the conservation status based only on herbarium records of a Neotropical tree
- (2019) André Carneiro Muniz et al. Scientific Reports
- Genomic Selection with Allele Dosage in Panicum maximum Jacq.
- (2019) Letícia A. de C. Lara et al. G3-Genes Genomes Genetics
- Corrigendum: Genetic Mapping With Allele Dosage Information in Tetraploid Urochloa decumbens (Stapf) R. D. Webster Reveals Insights Into Spittlebug (Notozulia entreriana Berg) Resistance
- (2019) Rebecca Caroline Ulbricht Ferreira et al. Frontiers in Plant Science
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- Reproductive Systems in Paspalum: Relevance for Germplasm Collection and Conservation, Breeding Techniques, and Adoption of Released Cultivars
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- (2019) Alice Patella et al. Genes
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- (2018) Thomas James Ellis et al. Molecular Ecology Resources
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- (2018) Valérie Laucou et al. PLoS One
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- (2018) Peter M. Bourke et al. Frontiers in Plant Science
- SNP Data Quality Control in a National Beef and Dairy Cattle System and Highly Accurate SNP Based Parentage Verification and Identification
- (2018) Matthew C. McClure et al. Frontiers in Genetics
- Research priorities for next-generation breeding of tropical forages in Brazil
- (2018) Jorge Fernando Pereira et al. Crop Breeding and Applied Biotechnology
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- (2018) Mobashwer Alam et al. PLoS One
- Population structure, relatedness and ploidy levels in an apple gene bank revealed through genotyping-by-sequencing
- (2018) Bjarne Larsen et al. PLoS One
- A fully automated pipeline for quantitative genotype calling from next generation sequencing data in autopolyploids
- (2018) Guilherme S. Pereira et al. BMC BIOINFORMATICS
- Parentage assignment with genotyping‐by‐sequencing data
- (2018) Andrew Whalen et al. JOURNAL OF ANIMAL BREEDING AND GENETICS
- Pedigree reconstruction from SNP data: parentage assignment, sibship clustering and beyond
- (2017) Jisca Huisman Molecular Ecology Resources
- Hybrid identification and genetic variation of Elymus sibiricus hybrid populations using EST-SSR markers
- (2017) Xuhong Zhao et al. HEREDITAS
- Probabilistic Multilocus Haplotype Reconstruction in Outcrossing Tetraploids
- (2016) Chaozhi Zheng et al. GENETICS
- Microsatellite markers: what they mean and why they are so useful
- (2016) Maria Lucia Carneiro Vieira et al. GENETICS AND MOLECULAR BIOLOGY
- Clustering Genes of Common Evolutionary History
- (2016) Kevin Gori et al. MOLECULAR BIOLOGY AND EVOLUTION
- Principal component analysis: a review and recent developments
- (2016) Ian T. Jolliffe et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES
- Unravelling the inheritance,QSTand reproductive phenology attributes of the tetraploid tropical grassBrachiaria ruziziensis(Germain et Evrard)
- (2016) Rosangela M. Simeão et al. PLANT BREEDING
- Genetic evaluation and selection index in tetraploidBrachiaria ruziziensis
- (2016) Rosangela Simeão et al. PLANT BREEDING
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- (2016) Benjamin E. Goulet et al. PLANT PHYSIOLOGY
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- (2016) N.K. Jha et al. Quality Assurance and Safety of Crops & Foods
- Probabilistic Multilocus Haplotype Reconstruction in Outcrossing Tetraploids
- (2016) Chaozhi Zheng et al. GENETICS
- The Report of My Death was an Exaggeration: A Review for Researchers Using Microsatellites in the 21st Century
- (2016) Richard G. J. Hodel et al. Applications in Plant Sciences
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- (2016) Bianca B. Z. Vigna et al. PLoS One
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- (2015) A. Spielmann et al. Molecular Ecology Resources
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- (2013) V. Subashini et al. 3 Biotech
- The simulation of meiosis in diploid and tetraploid organisms using various genetic models
- (2012) Roeland E Voorrips et al. BMC BIOINFORMATICS
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- (2012) Kun Ji et al. GENETIC RESOURCES AND CROP EVOLUTION
- Computationally Efficient Sibship and Parentage Assignment from Multilocus Marker Data
- (2012) J. Wang GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Principal Components Analysis of Population Admixture
- (2012) Jianzhong Ma et al. PLoS One
- Large-scale Parentage Inference with SNPs: an Efficient Algorithm for Statistical Confidence of Parent Pair Allocations
- (2012) Eric C. Anderson Statistical Applications in Genetics and Molecular Biology
- Breeding tropical forages
- (2012) L Jank et al. Crop Breeding and Applied Biotechnology
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Technical note: Efficient parentage assignment and pedigree reconstruction with dense single nucleotide polymorphism data
- (2011) B.J. Hayes JOURNAL OF DAIRY SCIENCE
- Current trends in microsatellite genotyping
- (2011) E. GUICHOUX et al. Molecular Ecology Resources
- Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges
- (2011) S. J. HELYAR et al. Molecular Ecology Resources
- Phytozome: a comparative platform for green plant genomics
- (2011) David M. Goodstein et al. NUCLEIC ACIDS RESEARCH
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Genetic diversity and population structure analysis of the tropical pasture grass Brachiaria humidicola based on microsatellites, cytogenetics, morphological traits, and geographical origin
- (2010) L. Jungmann et al. GENOME
- Using eigenvalues as variance priors in the prediction of genomic breeding values by principal component analysis
- (2010) N.P.P. Macciotta et al. JOURNAL OF DAIRY SCIENCE
- Among and within family selection and combined half-sib family selection in Panicum maximum Jacq.
- (2010) Janaina Azevedo Martuscello et al. REVISTA BRASILEIRA DE ZOOTECNIA-BRAZILIAN JOURNAL OF ANIMAL SCIENCE
- Toward in vitro fertilization in Brachiaria spp.
- (2010) Diva M. A. Dusi et al. SEXUAL PLANT REPRODUCTION
- COLONY: a program for parentage and sibship inference from multilocus genotype data
- (2009) OWEN R. JONES et al. Molecular Ecology Resources
- What is principal component analysis?
- (2008) Markus Ringnér NATURE BIOTECHNOLOGY
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