RNase III participates in control of quorum sensing, pigmentation and oxidative stress resistance in Rhodobacter sphaeroides

Small RNAs, Large Networks: Posttranscriptional Regulons in Gram-Negative Bacteria

(2023) Kai Papenfort et al.   Annual Review of Microbiology

The Small RNA-Binding Protein CcaF1 Promotes Formation of Photosynthetic Complexes in Rhodobacter sphaeroides

(2023) Julian Grützner et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ribonuclease E strongly impacts bacterial adaptation to different growth conditions

(2023) Janek Börner et al.   RNA Biology

Design–Build–Test of Synthetic Promoters for Inducible Gene Regulation in Alphaproteobacteria

(2023) Jonas Kretz et al.   ACS Synthetic Biology

RNase III Participates in the Adaptation to Temperature Shock and Oxidative Stress in Escherichia coli

(2022) Maxence Lejars et al.   Microorganisms

RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression

(2022) Stuart W. McKellar et al.   Nature Communications

RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3′UTR required for intermediate vancomycin resistance

(2022) Daniel G. Mediati et al.   Nature Communications

Impact of PNPase on the transcriptome of Rhodobacter sphaeroides and its cooperation with RNase III and RNase E

(2021) Daniel-Timon Spanka et al.   BMC GENOMICS

The small DUF1127 protein CcaF1 from Rhodobacter sphaeroides is an RNA-binding protein involved in sRNA maturation and RNA turnover

(2021) Julian Grützner et al.   NUCLEIC ACIDS RESEARCH

A Complex Network of Sigma Factors and sRNA StsR Regulates Stress Responses in R. sphaeroides

(2021) Katrin M. H. Eisenhardt et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

sRNA-mediated RNA processing regulates bacterial cell division

(2021) Julian Grützner et al.   NUCLEIC ACIDS RESEARCH

RNase III and RNase E Influence Posttranscriptional Regulatory Networks Involved in Virulence Factor Production, Metabolism, and Regulatory RNA Processing in Bordetella pertussis

(2021) Gyles Ifill et al.   mSphere

Maturation of UTR-Derived sRNAs Is Modulated during Adaptation to Different Growth Conditions

(2021) Daniel-Timon Spanka et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

sRNA-mediated control in bacteria: An increasing diversity of regulatory mechanisms

(2020) Mikkel Girke Jørgensen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

(2020) Anton Hördt et al.   Frontiers in Microbiology

RNase I Modulates Escherichia coli Motility, Metabolism, and Resistance

(2020) Yashasvika Duggal et al.   ACS Chemical Biology

Transcript decay mediated by RNase III in Borrelia burgdorferi

(2020) Santina Snow et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Antisense RNA asPcrL regulates expression of photosynthesis genes in Rhodobacter sphaeroides by promoting RNase III-dependent turn-over of puf mRNA

(2020) Carina M. Reuscher et al.   RNA Biology

The RNase YbeY is vital for ribosome maturation, stress resistance and virulence of the natural genetic engineer Agrobacterium tumefaciens

(2019) Philip Möller et al.   JOURNAL OF BACTERIOLOGY

A novel LuxR‐type solo of Sinorhizobium meliloti , NurR, is regulated by the chromosome replication coordinator, DnaA, and activates quorum sensing

(2019) Matthew McIntosh et al.   MOLECULAR MICROBIOLOGY

RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation

(2019) David Lalaouna et al.   NUCLEIC ACIDS RESEARCH

PcrX, an sRNA derived from the 3′- UTR of the Rhodobacter sphaeroides puf operon modulates expression of puf genes encoding proteins of the bacterial photosynthetic apparatus

(2018) Katrin Eisenhardt et al.   MOLECULAR MICROBIOLOGY

In vivo cleavage rules and target repertoire of RNase III in Escherichia coli

(2018) Yael Altuvia et al.   NUCLEIC ACIDS RESEARCH

Integrated genome browser: visual analytics platform for genomics

(2016) Nowlan H. Freese et al.   BIOINFORMATICS

Regulation of a polyamine transporter by the conserved 3′ UTR-derived sRNA SorX confers resistance to singlet oxygen and organic hydroperoxides inRhodobacter sphaeroides

(2016) Tao Peng et al.   RNA Biology

Characteristics of Pos19 – A Small Coding RNA in the Oxidative Stress Response of Rhodobacter sphaeroides

(2016) Katrin M. H. Müller et al.   PLoS One

A Cluster of Four Homologous Small RNAs Modulates C1Metabolism and the Pyruvate Dehydrogenase Complex in Rhodobacter sphaeroides under Various Stress Conditions

(2015) Fabian Billenkamp et al.   JOURNAL OF BACTERIOLOGY

The sRNA SorY confers resistance during photooxidative stress by affecting a metabolite transporter inRhodobacter sphaeroides

(2015) Fazal Adnan et al.   RNA Biology

READemption--a tool for the computational analysis of deep-sequencing-based transcriptome data

(2014) K. U. Forstner et al.   BIOINFORMATICS

Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides

(2014) Bernhard Remes et al.   BMC GENOMICS

RNase E Affects the Expression of the Acyl-Homoserine Lactone Synthase Gene sinI in Sinorhizobium meliloti

(2014) K. Baumgardt et al.   JOURNAL OF BACTERIOLOGY

Spatial organization of transcription machinery and its segregation from the replisome in fast-growing bacterial cells

(2014) Cedric Cagliero et al.   NUCLEIC ACIDS RESEARCH

Global Analysis of Photosynthesis Transcriptional Regulatory Networks

(2014) Saheed Imam et al.   PLoS Genetics

RNase III: Genetics and Function; Structure and Mechanism

(2013) Donald L. Court et al.   Annual Review of Genetics

The Escherichia coli Translation-Associated Heat Shock Protein YbeY Is Involved in rRNA Transcription Antitermination

(2013) Maya Grinwald et al.   PLoS One

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

Ribonuclease III mechanisms of double-stranded RNA cleavage

(2013) Allen W. Nicholson   Wiley Interdisciplinary Reviews-RNA

RNA-Seq and RNA Immunoprecipitation Analyses of the Transcriptome of Streptomyces coelicolor Identify Substrates for RNase III

(2012) M. L. Gatewood et al.   JOURNAL OF BACTERIOLOGY

Conserved Bacterial RNase YbeY Plays Key Roles in 70S Ribosome Quality Control and 16S rRNA Maturation

(2012) Asha Ivy Jacob et al.   MOLECULAR CELL

Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ

(2012) N. N. Mank et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Regulatory Functions of the Staphylococcus aureus Endoribonuclease III in Gene Expression

(2012) Efthimia Lioliou et al.   PLoS Genetics

Convergence of the Transcriptional Responses to Heat Shock and Singlet Oxygen Stresses

(2012) Yann S. Dufour et al.   PLoS Genetics

RNase III-Dependent Expression of the rpsO-pnpOperon of Streptomyces coelicolor

(2011) M. L. Gatewood et al.   JOURNAL OF BACTERIOLOGY

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Overlapping Alternative Sigma Factor Regulons in the Response to Singlet Oxygen in Rhodobacter sphaeroides

(2010) A. M. Nuss et al.   JOURNAL OF BACTERIOLOGY

RNase III Participates in GadY-Dependent Cleavage of the gadX-gadW mRNA

(2010) Jason A. Opdyke et al.   JOURNAL OF MOLECULAR BIOLOGY

Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing

(2010) Bryan W. Davies et al.   MOLECULAR MICROBIOLOGY

rtracklayer: an R package for interfacing with genome browsers

(2009) M. Lawrence et al.   BIOINFORMATICS

Autogenous Regulation of Escherichia coli Polynucleotide Phosphorylase Expression Revisited

(2009) T. Carzaniga et al.   JOURNAL OF BACTERIOLOGY

Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides

(2009) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

RpoHII Activates Oxidative-Stress Defense Systems and Is Controlled by RpoE in the Singlet Oxygen-Dependent Response in Rhodobacter sphaeroides

(2008) A. M. Nuss et al.   JOURNAL OF BACTERIOLOGY