Maturation of UTR-Derived sRNAs Is Modulated during Adaptation to Different Growth Conditions

Impact of PNPase on the transcriptome of Rhodobacter sphaeroides and its cooperation with RNase III and RNase E

(2021) Daniel-Timon Spanka et al.   BMC GENOMICS

The small DUF1127 protein CcaF1 from Rhodobacter sphaeroides is an RNA-binding protein involved in sRNA maturation and RNA turnover

(2021) Julian Grützner et al.   NUCLEIC ACIDS RESEARCH

Regulation of Bacterial Ribonucleases

(2021) Murray P. Deutscher   Annual Review of Microbiology

sRNA-mediated RNA processing regulates bacterial cell division

(2021) Julian Grützner et al.   NUCLEIC ACIDS RESEARCH

Global Transcriptome Profiling of Enterobacter Strain NRS-1 in Response to Hydrogen Peroxide Stress Treatment

(2020) Yun-Yan Fei et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

An RNA-seq based comparative approach reveals the transcriptome-wide interplay between 3′-to-5′ exoRNases and RNase Y

(2020) Laura Broglia et al.   Nature Communications

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

(2020) Anton Hördt et al.   Frontiers in Microbiology

Gene autoregulation by 3’ UTR-derived bacterial small RNAs

(2020) Mona Hoyos et al.   eLife

Early termination of the Shiga toxin transcript generates a regulatory small RNA

(2020) Brandon M. Sy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The mRNA derived MalH sRNA contributes to alternative carbon source utilization by tuning maltoporin expression in E. coli

(2020) Ira A. Iosub et al.   RNA Biology

Heat-responsive and time-resolved transcriptome and metabolome analyses of Escherichia coli uncover thermo-tolerant mechanisms

(2020) Sinyeon Kim et al.   Scientific Reports

Antisense RNA asPcrL regulates expression of photosynthesis genes in Rhodobacter sphaeroides by promoting RNase III-dependent turn-over of puf mRNA

(2020) Carina M. Reuscher et al.   RNA Biology

Comparative analyses of the variation of the transcriptome and proteome of Rhodobacter sphaeroides throughout growth

(2019) Jochen Bathke et al.   BMC GENOMICS

The protein regulator ArgR and the sRNA derived from the 3’-UTR region of its gene, ArgX, both regulate the arginine deiminase pathway in Lactococcus lactis

(2019) Sjoerd Bouwe van der Meulen et al.   PLoS One

RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation

(2019) David Lalaouna et al.   NUCLEIC ACIDS RESEARCH

Adaptation of the Alphaproteobacterium Rhodobacter sphaeroides to stationary phase

(2019) Matthew McIntosh et al.   ENVIRONMENTAL MICROBIOLOGY

A rhlI 5′ UTR-Derived sRNA Regulates RhlR-Dependent Quorum Sensing in Pseudomonas aeruginosa

(2019) Maureen K. Thomason et al.   mBio

The conserved 3′ UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration

(2019) Chuan Wang et al.   NUCLEIC ACIDS RESEARCH

PcrX, an sRNA derived from the 3′- UTR of the Rhodobacter sphaeroides puf operon modulates expression of puf genes encoding proteins of the bacterial photosynthetic apparatus

(2018) Katrin Eisenhardt et al.   MOLECULAR MICROBIOLOGY

A response regulator of the OmpR family is part of the regulatory network controlling the oxidative stress response of Rhodobacter sphaeroides

(2018) Zhiping Zhao et al.   Environmental Microbiology Reports

An RpoHI-Dependent Response Promotes Outgrowth after Extended Stationary Phase in the Alphaproteobacterium Rhodobacter sphaeroides

(2017) B. Remes et al.   JOURNAL OF BACTERIOLOGY

RNA Sequencing Identifies New RNase III Cleavage Sites in Escherichia coli and Reveals Increased Regulation of mRNA

(2017) Gina C. Gordon et al.   mBio

Campylobacter jejuni transcriptome changes during loss of culturability in water

(2017) Christina Bronowski et al.   PLoS One

A 3′ UTR-Derived Small RNA Provides the Regulatory Noncoding Arm of the Inner Membrane Stress Response

(2016) Yanjie Chao et al.   MOLECULAR CELL

Regulation of a polyamine transporter by the conserved 3′ UTR-derived sRNA SorX confers resistance to singlet oxygen and organic hydroperoxides inRhodobacter sphaeroides

(2016) Tao Peng et al.   RNA Biology

Characteristics of Pos19 – A Small Coding RNA in the Oxidative Stress Response of Rhodobacter sphaeroides

(2016) Katrin M. H. Müller et al.   PLoS One

The Conserved Dcw Gene Cluster of R. sphaeroides Is Preceded by an Uncommonly Extended 5’ Leader Featuring the sRNA UpsM

(2016) Lennart Weber et al.   PLoS One

A Cluster of Four Homologous Small RNAs Modulates C1Metabolism and the Pyruvate Dehydrogenase Complex in Rhodobacter sphaeroides under Various Stress Conditions

(2015) Fabian Billenkamp et al.   JOURNAL OF BACTERIOLOGY

The sRNA SorY confers resistance during photooxidative stress by affecting a metabolite transporter inRhodobacter sphaeroides

(2015) Fazal Adnan et al.   RNA Biology

Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides

(2014) Bernhard Remes et al.   BMC GENOMICS

RNase J is required for processing of a small number of RNAs inRhodobacter sphaeroides

(2014) Tom Rische-Grahl et al.   RNA Biology

Temporal Expression Program of Quorum Sensing-Based Transcription Regulation in Sinorhizobium meliloti

(2013) P. Charoenpanich et al.   JOURNAL OF BACTERIOLOGY

Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses

(2013) Bork A. Berghoff et al.   PLoS Genetics

RNase III Controls the Degradation of corA mRNA in Escherichia coli

(2012) B. Lim et al.   JOURNAL OF BACTERIOLOGY

Conserved Bacterial RNase YbeY Plays Key Roles in 70S Ribosome Quality Control and 16S rRNA Maturation

(2012) Asha Ivy Jacob et al.   MOLECULAR CELL

Interaction of two photoreceptors in the regulation of bacterial photosynthesis genes

(2012) Sebastian Metz et al.   NUCLEIC ACIDS RESEARCH

Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ

(2012) N. N. Mank et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ordered processing of intervening sequences in 23S rRNA ofRhodobacter sphaeroidesrequires RNase J

(2012) Tom Rische et al.   RNA Biology

The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq

(2012) J. M. Andrade et al.   RNA

Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides

(2011) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

Post-translational modification of RNase R is regulated by stress-dependent reduction in the acetylating enzyme Pka (YfiQ)

(2011) W. Liang et al.   RNA

Response of the photosynthetic bacteriumRhodobacter sphaeroidesto iron limitation and the role of a Fur orthologue in this response

(2011) Verena Peuser et al.   Environmental Microbiology Reports

Overlapping Alternative Sigma Factor Regulons in the Response to Singlet Oxygen in Rhodobacter sphaeroides

(2010) A. M. Nuss et al.   JOURNAL OF BACTERIOLOGY

Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides

(2009) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal

(2008) Atilio Deana et al.   NATURE

PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins

(2008) J. M. Andrade et al.   RNA