The small DUF1127 protein CcaF1 from Rhodobacter sphaeroides is an RNA-binding protein involved in sRNA maturation and RNA turnover

Arginine-rich small proteins with a domain of unknown function DUF1127 play a role in phosphate and carbon metabolism of Agrobacterium tumefaciens

(2020) Alexander Kraus et al.   JOURNAL OF BACTERIOLOGY

RNA-Binding Proteins Driving the Regulatory Activity of Small Non-coding RNAs in Bacteria

(2020) Ana P. Quendera et al.   Frontiers in Molecular Biosciences

A new role for CsrA: promotion of complex formation between an sRNA and its mRNA target in Bacillus subtilis

(2019) Peter Müller et al.   RNA Biology

Adaptation of the Alphaproteobacterium Rhodobacter sphaeroides to stationary phase

(2019) Matthew McIntosh et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of three small proteins in Brucella abortus linked to fucose utilization.

(2018) James A. Budnick et al.   JOURNAL OF BACTERIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNA-binding proteins in bacteria

(2018) Erik Holmqvist et al.   NATURE REVIEWS MICROBIOLOGY

The regulon of the RNA chaperone CspA and its auto-regulation in Staphylococcus aureus

(2018) Carlos J Caballero et al.   NUCLEIC ACIDS RESEARCH

Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA

(2018) Yiwei Liu et al.   Cell Reports

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

A response regulator of the OmpR family is part of the regulatory network controlling the oxidative stress response of Rhodobacter sphaeroides

(2018) Zhiping Zhao et al.   Environmental Microbiology Reports

A conserved α-proteobacterial small RNA contributes to osmoadaptation and symbiotic efficiency of rhizobia on legume roots

(2017) Marta Robledo et al.   ENVIRONMENTAL MICROBIOLOGY

An RpoHI-Dependent Response Promotes Outgrowth after Extended Stationary Phase in the Alphaproteobacterium Rhodobacter sphaeroides

(2017) B. Remes et al.   JOURNAL OF BACTERIOLOGY

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

(2017) Yanjie Chao et al.   MOLECULAR CELL

ProQ/FinO-domain proteins: another ubiquitous family of RNA matchmakers?

(2017) Mikolaj Olejniczak et al.   MOLECULAR MICROBIOLOGY

Regulation of a polyamine transporter by the conserved 3′ UTR-derived sRNA SorX confers resistance to singlet oxygen and organic hydroperoxides inRhodobacter sphaeroides

(2016) Tao Peng et al.   RNA Biology

Structural basis for the recognition of guide RNA and target DNA heteroduplex by Argonaute

(2016) Tomohiro Miyoshi et al.   Nature Communications

Characteristics of Pos19 – A Small Coding RNA in the Oxidative Stress Response of Rhodobacter sphaeroides

(2016) Katrin M. H. Müller et al.   PLoS One

The Conserved Dcw Gene Cluster of R. sphaeroides Is Preceded by an Uncommonly Extended 5’ Leader Featuring the sRNA UpsM

(2016) Lennart Weber et al.   PLoS One

A Cluster of Four Homologous Small RNAs Modulates C1Metabolism and the Pyruvate Dehydrogenase Complex in Rhodobacter sphaeroides under Various Stress Conditions

(2015) Fabian Billenkamp et al.   JOURNAL OF BACTERIOLOGY

Thermodynamic matchers for the construction of the cuckoo RNA family

(2015) Jan Reinkensmeier et al.   RNA Biology

The sRNA SorY confers resistance during photooxidative stress by affecting a metabolite transporter inRhodobacter sphaeroides

(2015) Fazal Adnan et al.   RNA Biology

The stress-related, rhizobial small RNA RcsR1 destabilizes the autoinducer synthase encoding mRNAsinIinSinorhizobium meliloti

(2015) Kathrin Baumgardt et al.   RNA Biology

Small Proteins Can No Longer Be Ignored

(2014) Gisela Storz et al.   Annual Review of Biochemistry

READemption--a tool for the computational analysis of deep-sequencing-based transcriptome data

(2014) K. U. Forstner et al.   BIOINFORMATICS

Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides

(2014) Bernhard Remes et al.   BMC GENOMICS

Riboregulators and the role of Hfq in photosynthetic bacteria

(2014) Wolfgang R Hess et al.   RNA Biology

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

(2014) Steve Hoffmann et al.   GENOME BIOLOGY

Hydrogen peroxide stress provokes a metabolic reprogramming in Pseudomonas fluorescens: Enhanced production of pyruvate

(2013) Adam Bignucolo et al.   JOURNAL OF BIOTECHNOLOGY

Bacterial Argonaute Samples the Transcriptome to Identify Foreign DNA

(2013) Ivan Olovnikov et al.   MOLECULAR CELL

Controlling the delicate balance of tetrapyrrole biosynthesis

(2013) L. Yin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Licensing and due process in the turnover of bacterial RNA

(2013) Katarzyna J. Bandyra et al.   RNA Biology

Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses

(2013) Bork A. Berghoff et al.   PLoS Genetics

Effect of tellurite-mediated oxidative stress on the Escherichia coli glycolytic pathway

(2012) Mauricio Valdivia-González et al.   BIOMETALS

microRNA-independent recruitment of Argonaute 1 to nanos mRNA through the Smaug RNA-binding protein

(2012) Benjamin D Pinder et al.   EMBO REPORTS

Dual RpoH Sigma Factors and Transcriptional Plasticity in a Symbiotic Bacterium

(2012) Melanie J. Barnett et al.   JOURNAL OF BACTERIOLOGY

Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ

(2012) N. N. Mank et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An expanding universe of small proteins

(2011) Errett C Hobbs et al.   CURRENT OPINION IN MICROBIOLOGY

A systematic investigation of Escherichia coli central carbon metabolism in response to superoxide stress

(2010) Bin Rui et al.   BMC Systems Biology

Overlapping Alternative Sigma Factor Regulons in the Response to Singlet Oxygen in Rhodobacter sphaeroides

(2010) A. M. Nuss et al.   JOURNAL OF BACTERIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements

(2009) Kira S Makarova et al.   Biology Direct

Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides

(2009) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology

RpoHII Activates Oxidative-Stress Defense Systems and Is Controlled by RpoE in the Singlet Oxygen-Dependent Response in Rhodobacter sphaeroides

(2008) A. M. Nuss et al.   JOURNAL OF BACTERIOLOGY

Organization and Evolution of the Biological Response to Singlet Oxygen Stress

(2008) Yann S. Dufour et al.   JOURNAL OF MOLECULAR BIOLOGY