A Complex Network of Sigma Factors and sRNA StsR Regulates Stress Responses in R. sphaeroides

The small DUF1127 protein CcaF1 from Rhodobacter sphaeroides is an RNA-binding protein involved in sRNA maturation and RNA turnover

(2021) Julian Grützner et al.   NUCLEIC ACIDS RESEARCH

The ever-expanding world of bacterial cyclic oligonucleotide second messengers

(2021) Soo hun Yoon et al.   CURRENT OPINION IN MICROBIOLOGY

sRNA-mediated RNA processing regulates bacterial cell division

(2021) Julian Grützner et al.   NUCLEIC ACIDS RESEARCH

sRNA-mediated control in bacteria: An increasing diversity of regulatory mechanisms

(2020) Mikkel Girke Jørgensen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Small RNA ‐binding protein RapZ mediates cell envelope precursor sensing and signaling in Escherichia coli

(2020) Muna A Khan et al.   EMBO JOURNAL

Hierarchy in Hfq Chaperon Occupancy of Small RNA Targets Plays a Major Role in Their Regulation

(2020) Raya Faigenbaum-Romm et al.   Cell Reports

sRNA scr5239 Involved in Feedback Loop Regulation of Streptomyces coelicolor Central Metabolism

(2020) Franziska Engel et al.   Frontiers in Microbiology

The small regulatory RNA Lpr10 regulates the expression of RpoS in Legionella pneumophila

(2020) Joseph Saoud et al.   MOLECULAR MICROBIOLOGY

Antisense RNA asPcrL regulates expression of photosynthesis genes in Rhodobacter sphaeroides by promoting RNase III-dependent turn-over of puf mRNA

(2020) Carina M. Reuscher et al.   RNA Biology

Comparative analyses of the variation of the transcriptome and proteome of Rhodobacter sphaeroides throughout growth

(2019) Jochen Bathke et al.   BMC GENOMICS

Vibrio cholerae CsrA Directly Regulates varA To Increase Expression of the Three Nonredundant Csr Small RNAs

(2019) Heidi A. Butz et al.   mBio

New aspects of RNA-based regulation by Hfq and its partner sRNAs

(2018) Kumari Kavita et al.   CURRENT OPINION IN MICROBIOLOGY

PcrX, an sRNA derived from the 3′- UTR of the Rhodobacter sphaeroides puf operon modulates expression of puf genes encoding proteins of the bacterial photosynthetic apparatus

(2018) Katrin Eisenhardt et al.   MOLECULAR MICROBIOLOGY

Hfq chaperone brings speed dating to bacterial sRNA

(2018) Andrew Santiago-Frangos et al.   Wiley Interdisciplinary Reviews-RNA

An RpoHI-Dependent Response Promotes Outgrowth after Extended Stationary Phase in the Alphaproteobacterium Rhodobacter sphaeroides

(2017) B. Remes et al.   JOURNAL OF BACTERIOLOGY

IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions

(2017) Martin Mann et al.   NUCLEIC ACIDS RESEARCH

The Pseudomonas aeruginosa CrcZ RNA interferes with Hfq-mediated riboregulation

(2017) Elisabeth Sonnleitner et al.   PLoS One

Regulation of a polyamine transporter by the conserved 3′ UTR-derived sRNA SorX confers resistance to singlet oxygen and organic hydroperoxides inRhodobacter sphaeroides

(2016) Tao Peng et al.   RNA Biology

Characteristics of Pos19 – A Small Coding RNA in the Oxidative Stress Response of Rhodobacter sphaeroides

(2016) Katrin M. H. Müller et al.   PLoS One

The Conserved Dcw Gene Cluster of R. sphaeroides Is Preceded by an Uncommonly Extended 5’ Leader Featuring the sRNA UpsM

(2016) Lennart Weber et al.   PLoS One

Structure of Bacterial Regulatory RNAs Determines Their Performance in Competition for the Chaperone Protein Hfq

(2015) Ewelina M. Małecka et al.   BIOCHEMISTRY

Members of the PpaA/AerR Antirepressor Family Bind Cobalamin

(2015) Arjan J. Vermeulen et al.   JOURNAL OF BACTERIOLOGY

A Cluster of Four Homologous Small RNAs Modulates C1Metabolism and the Pyruvate Dehydrogenase Complex in Rhodobacter sphaeroides under Various Stress Conditions

(2015) Fabian Billenkamp et al.   JOURNAL OF BACTERIOLOGY

The sRNA SorY confers resistance during photooxidative stress by affecting a metabolite transporter inRhodobacter sphaeroides

(2015) Fazal Adnan et al.   RNA Biology

Bacterial Sigma Factors: A Historical, Structural, and Genomic Perspective

(2014) Andrey Feklístov et al.   Annual Review of Microbiology

Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides

(2014) Bernhard Remes et al.   BMC GENOMICS

Physiological roles of small RNA molecules

(2014) C. Michaux et al.   MICROBIOLOGY-SGM

Global Analysis of Photosynthesis Transcriptional Regulatory Networks

(2014) Saheed Imam et al.   PLoS Genetics

DegS and RseP Homologous Proteases Are Involved in Singlet Oxygen Dependent Activation of RpoE in Rhodobacter sphaeroides

(2013) Aaron M. Nuss et al.   PLoS One

A mixed incoherent feed-forward loop contributes to the regulation of bacterial photosynthesis genes

(2013) Nils N. Mank et al.   RNA Biology

Role of the Irr Protein in the Regulation of Iron Metabolism in Rhodobacter sphaeroides

(2012) Verena Peuser et al.   PLoS One

Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ

(2012) N. N. Mank et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergence of the Transcriptional Responses to Heat Shock and Singlet Oxygen Stresses

(2012) Yann S. Dufour et al.   PLoS Genetics

Despite Similar Binding to the Hfq Protein Regulatory RNAs Widely Differ in Their Competition Performance

(2011) Mikołaj Olejniczak   BIOCHEMISTRY

Evolutionary origin of the Rhodobacter sphaeroides specialized RpoN sigma factors

(2011) Clelia Domenzain et al.   FEMS MICROBIOLOGY LETTERS

Competition among Hfq-binding small RNAs in Escherichia coli

(2011) Kyung Moon et al.   MOLECULAR MICROBIOLOGY

Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides

(2011) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

Overlapping Alternative Sigma Factor Regulons in the Response to Singlet Oxygen in Rhodobacter sphaeroides

(2010) A. M. Nuss et al.   JOURNAL OF BACTERIOLOGY

Disruption of small RNA signaling caused by competition for Hfq

(2010) R. Hussein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides

(2009) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

RpoHII Activates Oxidative-Stress Defense Systems and Is Controlled by RpoE in the Singlet Oxygen-Dependent Response in Rhodobacter sphaeroides

(2008) A. M. Nuss et al.   JOURNAL OF BACTERIOLOGY