Natural Selection Signatures in the Hondo and Ryukyu Japanese Subpopulations

Genetic dissection ofHLA-DRB1*15:01and XL9 region variants in Japanese patients with systemic lupus erythematosus: primary role forHLA-DRB1*15:01

(2023) Aya Kawasaki et al.   RMD Open

Androgen receptor binding sites enabling genetic prediction of mortality due to prostate cancer in cancer-free subjects

(2023) Shuji Ito et al.   Nature Communications

Genomic analyses of 10,376 individuals in the Westlake BioBank for Chinese (WBBC) pilot project

(2022) Pei-Kuan Cong et al.   Nature Communications

Helicobacter pylori genomes reveal Paleolithic human migration to the east end of Asia

(2022) Rumiko Suzuki et al.   iScience

The influence of evolutionary history on human health and disease

(2021) Mary Lauren Benton et al.   NATURE REVIEWS GENETICS

Genome wide association study of HTLV-1–associated myelopathy/tropical spastic paraparesis in the Japanese population

(2021) Marina Penova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

(2021) Peter Ebert et al.   SCIENCE

Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer’s disease risk

(2021) Daichi Shigemizu et al.   Translational Psychiatry

HLA‐DRB1*15:01 is a co‐receptor for Epstein–Barr virus, linking genetic and environmental risk factors for multiple sclerosis

(2021) Jennifer Menegatti et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Ancient genomics reveals tripartite origins of Japanese populations

(2021) Niall P. Cooke et al.   Science Advances

A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response

(2021) Yang Luo et al.   NATURE GENETICS

Genome-Wide Natural Selection Signatures Are Linked to Genetic Risk of Modern Phenotypes in the Japanese Population

(2020) Yoshiaki Yasumizu et al.   MOLECULAR BIOLOGY AND EVOLUTION

The mutational constraint spectrum quantified from variation in 141,456 humans

(2020) Konrad J. Karczewski et al.   NATURE

Dimensionality reduction reveals fine-scale structure in the Japanese population with consequences for polygenic risk prediction

(2020) Saori Sakaue et al.   Nature Communications

Epidemiology of HTLV-1 Infection and ATL in Japan: An Update

(2020) Masako Iwanaga   Frontiers in Microbiology

The Genomics of Human Local Adaptation

(2020) Jasmin S. Rees et al.   TRENDS IN GENETICS

Identity-by-descent detection across 487,409 British samples reveals fine scale population structure and ultra-rare variant associations

(2020) Juba Nait Saada et al.   Nature Communications

Biomedical and genetic characteristics of the Ryukyuans: demographic history, diseases and physical and physiological traits

(2019) Kae Koganebuchi et al.   ANNALS OF HUMAN BIOLOGY

NARD: whole-genome reference panel of 1779 Northeast Asians improves imputation accuracy of rare and low-frequency variants

(2019) Seong-Keun Yoo et al.   Genome Medicine

Inference and analysis of population-specific fine-scale recombination maps across 26 diverse human populations

(2019) Jeffrey P. Spence et al.   Science Advances

The GenomeAsia 100K Project enables genetic discoveries across Asia

(2019)   NATURE

Deep whole-genome sequencing reveals recent selection signatures linked to evolution and disease risk of Japanese

(2018) Yukinori Okada et al.   Nature Communications

Patterns of shared signatures of recent positive selection across human populations

(2018) Kelsey Elizabeth Johnson et al.   Nature Ecology & Evolution

OUP accepted manuscript

(2018)   MOLECULAR BIOLOGY AND EVOLUTION

High-throughput inference of pairwise coalescence times identifies signals of selection and enriched disease heritability

(2018) Pier Francesco Palamara et al.   NATURE GENETICS

IKZF2 Drives Leukemia Stem Cell Self-Renewal and Inhibits Myeloid Differentiation

(2018) Sun-Mi Park et al.   Cell Stem Cell

Characterising private and shared signatures of positive selection in 37 Asian populations

(2017) Xuanyao Liu et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Structural Variation Shapes the Landscape of Recombination in Mouse

(2017) Andrew P. Morgan et al.   GENETICS

Genetic signatures of high-altitude adaptation in Tibetans

(2017) Jian Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Variation Shapes the Landscape of Recombination in Mouse

(2017) Andrew P. Morgan et al.   GENETICS

Principal contribution of HLA-DQ alleles, DQB1*06:04 and DQB1*03:01, to disease resistance against primary biliary cholangitis in a Japanese population

(2017) Michio Yasunami et al.   Scientific Reports

HLA-DRB1*15:01-DQA1*01:02-DQB1*06:02 Haplotype Protects Autoantibody-Positive Relatives From Type 1 Diabetes Throughout the Stages of Disease Progression

(2016) Alberto Pugliese et al.   DIABETES

HLA-A, HLA-B and HLA-DRB1 allele and haplotype frequencies of 10 918 Koreans from bone marrow donor registry in Korea

(2016) H. Park et al.   International Journal of Immunogenetics

Fast and accurate long-range phasing in a UK Biobank cohort

(2016) Po-Ru Loh et al.   NATURE GENETICS

Understanding of HLA-conferred susceptibility to chronic hepatitis B infection requires HLA genotyping-based association analysis

(2016) Nao Nishida et al.   Scientific Reports

Distribution of HLA haplotypes across Japanese Archipelago: similarity, difference and admixture

(2015) Hirofumi Nakaoka et al.   JOURNAL OF HUMAN GENETICS

Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals

(2015) Yosuke Kawai et al.   JOURNAL OF HUMAN GENETICS

Additive and interaction effects at three amino acid positions in HLA-DQ and HLA-DR molecules drive type 1 diabetes risk

(2015) Xinli Hu et al.   NATURE GENETICS

Integrated molecular analysis of adult T cell leukemia/lymphoma

(2015) Keisuke Kataoka et al.   NATURE GENETICS

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

High-Resolution Analyses of Human Leukocyte Antigens Allele and Haplotype Frequencies Based on 169,995 Volunteers from the China Bone Marrow Donor Registry Program

(2015) Xiao-Yang Zhou et al.   PLoS One

Epidemiology of atopic dermatitis in Japan

(2014) Satoshi Takeuchi et al.   JOURNAL OF DERMATOLOGY

Who Are the Okinawans? Ancestry, Genome Diversity, and Implications for the Genetic Study of Human Longevity From a Geographically Isolated Population

(2014) N. Bendjilali et al.   JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES

selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection

(2014) Z. A. Szpiech et al.   MOLECULAR BIOLOGY AND EVOLUTION

Keeping It Local: Evidence for Positive Selection in Swedish Arabidopsis thaliana

(2014) Christian D. Huber et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-Wide SNP Analysis Reveals Population Structure and Demographic History of the Ryukyu Islanders in the Southern Part of the Japanese Archipelago

(2014) Takehiro Sato et al.   MOLECULAR BIOLOGY AND EVOLUTION

CHROMOSOMAL REARRANGEMENTS AND THE GENETICS OF REPRODUCTIVE BARRIERS INMIMULUS(MONKEY FLOWERS)

(2013) Lila Fishman et al.   EVOLUTION

The impact of natural selection on health and disease: uses of the population genetics approach in humans

(2013) Estelle Vasseur et al.   Evolutionary Applications

Imputing Amino Acid Polymorphisms in Human Leukocyte Antigens

(2013) Xiaoming Jia et al.   PLoS One

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

(2012) Mathieu Gautier et al.   BIOINFORMATICS

The history of human populations in the Japanese Archipelago inferred from genome-wide SNP data with a special reference to the Ainu and the Ryukyuan populations

(2012) Timothy Jinam et al.   JOURNAL OF HUMAN GENETICS

Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis

(2012) Soumya Raychaudhuri et al.   NATURE GENETICS

Evolutionary Analysis of Classical HLA Class I and II Genes Suggests That Recent Positive Selection Acted on DPB1*04∶01 in Japanese Population

(2012) Minae Kawashima et al.   PLoS One

Epidemiological Aspects and World Distribution of HTLV-1 Infection

(2012) Antoine Gessain et al.   Frontiers in Microbiology

Current status of HTLV-1 infection

(2011) Toshiki Watanabe   INTERNATIONAL JOURNAL OF HEMATOLOGY

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

A Common Variation in EDAR Is a Genetic Determinant of Shovel-Shaped Incisors

(2009) Ryosuke Kimura et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Japanese Population Structure, Based on SNP Genotypes from 7003 Individuals Compared to Other Ethnic Groups: Effects on Population-Based Association Studies

(2008) Yumi Yamaguchi-Kabata et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Distribution of malignant lymphoma in Japan: Analysis of 2260 cases, 2001–2006

(2008) Ryosuke Aoki et al.   PATHOLOGY INTERNATIONAL