Ancient genomics reveals tripartite origins of Japanese populations

Genome-wide SNP data of Izumo and Makurazaki populations support inner-dual structure model for origin of Yamato people

(2021) Timothy Jinam et al.   JOURNAL OF HUMAN GENETICS

Genomic insights into the formation of human populations in East Asia

(2021) Chuan-Chao Wang et al.   NATURE

Ancient DNA indicates human population shifts and admixture in northern and southern China

(2020) Melinda A. Yang et al.   SCIENCE

Ancient genomes from northern China suggest links between subsistence changes and human migration

(2020) Chao Ning et al.   Nature Communications

A dynastic elite in monumental Neolithic society

(2020) Lara M. Cassidy et al.   NATURE

Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations

(2020) Takashi Gakuhari et al.   Communications Biology

A genetic history of the pre-contact Caribbean

(2020) Daniel M. Fernandes et al.   NATURE

The population history of northeastern Siberia since the Pleistocene

(2019) Martin Sikora et al.   NATURE

The formation of human populations in South and Central Asia

(2019) Vagheesh M. Narasimhan et al.   SCIENCE

Runs of homozygosity: windows into population history and trait architecture

(2018) Francisco C. Ceballos et al.   NATURE REVIEWS GENETICS

Estimating genetic kin relationships in prehistoric populations

(2018) Jose Manuel Monroy Kuhn et al.   PLoS One

The first horse herders and the impact of early Bronze Age steppe expansions into Asia

(2018) Peter de Barros Damgaard et al.   SCIENCE

The prehistoric peopling of Southeast Asia

(2018) Hugh McColl et al.   SCIENCE

Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

(2018) J. Víctor Moreno-Mayar et al.   NATURE

Bronze Age population dynamics and the rise of dairy pastoralism on the eastern Eurasian steppe

(2018) Choongwon Jeong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing the Relationship of Ancient and Modern Populations

(2017) Joshua G. Schraiber   GENETICS

Assessing the Relationship of Ancient and Modern Populations

(2017) Joshua G. Schraiber   GENETICS

Lost Foraging Opportunities for East Asian Hunter-Gatherers Due to Rising Sea Level Since the Last Glacial Maximum

(2016) Jade d'Alpoim Guedes et al.   GEOARCHAEOLOGY-AN INTERNATIONAL JOURNAL

A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan

(2016) Hideaki Kanzawa-Kiriyama et al.   JOURNAL OF HUMAN GENETICS

Combining bleach and mild predigestion improves ancient DNA recovery from bones

(2016) Sanne Boessenkool et al.   Molecular Ecology Resources

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

(2016) Swapan Mallick et al.   NATURE

Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc

(2016) Choongwon Jeong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The beginnings of rice and millet agriculture in prehistoric Japan

(2016) Hiroo Nasu et al.   QUATERNARY INTERNATIONAL

Summed Probability Distribution of 14C Dates Suggests Regional Divergences in the Population Dynamics of the Jomon Period in Eastern Japan

(2016) Enrico R. Crema et al.   PLoS One

Bayesian Analysis of Radiocarbon Dates

(2016) Christopher Bronk Ramsey   RADIOCARBON

Radiocarbon dating of one human and two dog burials from the Kamikuroiwa rock shelter site, Ehime Prefecture

(2015) TAKASHI GAKUHARI et al.   ANTHROPOLOGICAL SCIENCE

Model-Based Verification of Hypotheses on the Origin of Modern Japanese Revisited by Bayesian Inference Based on Genome-Wide SNP Data

(2015) Shigeki Nakagome et al.   MOLECULAR BIOLOGY AND EVOLUTION

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Neolithic and Bronze Age migration to Ireland and establishment of the insular Atlantic genome

(2015) Lara M. Cassidy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improving access to endogenous DNA in ancient bones and teeth

(2015) Peter B. Damgaard et al.   Scientific Reports

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

Partial uracil-DNA-glycosylase treatment for screening of ancient DNA

(2014) N. Rohland et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sea level and global ice volumes from the Last Glacial Maximum to the Holocene

(2014) K. Lambeck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers

(2014) P. Skoglund et al.   SCIENCE

Genome flux and stasis in a five millennium transect of European prehistory

(2014) Cristina Gamba et al.   Nature Communications

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Finding the Factors of Reduced Genetic Diversity on X Chromosomes of Macaca fascicularis : Male-Driven Evolution, Demography, and Natural Selection

(2013) Naoki Osada et al.   GENETICS

HAPLOFIND: A New Method for High-Throughput mtDNA Haplogroup Assignment

(2013) Dario Vianello et al.   HUMAN MUTATION

Accurate sex identification of ancient human remains using DNA shotgun sequencing

(2013) Pontus Skoglund et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

(2013) Maanasa Raghavan et al.   NATURE

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

The history of human populations in the Japanese Archipelago inferred from genome-wide SNP data with a special reference to the Ainu and the Ryukyuan populations

(2012) Timothy Jinam et al.   JOURNAL OF HUMAN GENETICS

Revising the human mutation rate: implications for understanding human evolution

(2012) Aylwyn Scally et al.   NATURE REVIEWS GENETICS

Global climate evolution during the last deglaciation

(2012) P. U. Clark et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Mitochondrial DNA analysis of Hokkaido Jomon skeletons: Remnants of archaic maternal lineages at the southwestern edge of former Beringia

(2011) Noboru Adachi et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Major Population Expansion of East Asians Began before Neolithic Time: Evidence of mtDNA Genomes

(2011) Hong-Xiang Zheng et al.   PLoS One

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The Domestication Process and Domestication Rate in Rice: Spikelet Bases from the Lower Yangtze

(2009) D. Q Fuller et al.   SCIENCE

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics