Inference and analysis of population-specific fine-scale recombination maps across 26 diverse human populations

LDJump: Estimating Variable Recombination Rates from Population Genetic Data

(2019) Philipp Hermann et al.   Molecular Ecology Resources

Characterizing mutagenic effects of recombination through a sequence-level genetic map

(2019) Bjarni V. Halldorsson et al.   SCIENCE

Reprogramming of Meiotic Chromatin Architecture during Spermatogenesis

(2019) Yao Wang et al.   MOLECULAR CELL

Divergent fine-scale recombination landscapes between a freshwater and marine population of threespine stickleback fish

(2019) Alice F Shanfelter et al.   Genome Biology and Evolution

Natural selection interacts with recombination to shape the evolution of hybrid genomes

(2018) Molly Schumer et al.   SCIENCE

Modulation of Prdm9-controlled meiotic chromosome asynapsis overrides hybrid sterility in mice

(2018) Sona Gregorova et al.   eLife

The Unreasonable Effectiveness of Convolutional Neural Networks in Population Genetic Inference

(2018) Lex Flagel et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Recombination Landscape in Wild House Mice Inferred Using Population Genomic Data

(2017) Tom R. Booker et al.   GENETICS

Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation

(2017) Julien Jouganous et al.   GENETICS

Efficient Computation of the Joint Sample Frequency Spectra for Multiple Populations

(2017) John A. Kamm et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Effects of Demographic History on the Detection of Recombination Hotspots from Linkage Disequilibrium

(2017) Amy L Dapper et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds

(2017) Takeshi Kawakami et al.   MOLECULAR ECOLOGY

The Red Queen model of recombination hot-spot evolution: a theoretical investigation

(2017) Thibault Latrille et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Refined genetic maps reveal sexual dimorphism in human meiotic recombination at multiple scales

(2017) Claude Bhérer et al.   Nature Communications

A map of human PRDM9 binding provides evidence for novel behaviors of PRDM9 and other zinc-finger proteins in meiosis

(2017) Nicolas Altemose et al.   eLife

Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates

(2017) Zachary Baker et al.   eLife

The Recombination Landscape in Wild House Mice Inferred Using Population Genomic Data

(2017) Tom R. Booker et al.   GENETICS

Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation

(2017) Julien Jouganous et al.   GENETICS

The Landscape of Mouse Meiotic Double-Strand Break Formation, Processing, and Repair

(2016) Julian Lange et al.   CELL

Two-Locus Likelihoods Under Variable Population Size and Fine-Scale Recombination Rate Estimation

(2016) J. A. Kamm et al.   GENETICS

Population structure and local selection yield high genomic variation inMimulus guttatus

(2016) Joshua R. Puzey et al.   MOLECULAR ECOLOGY

Re-engineering the zinc fingers of PRDM9 reverses hybrid sterility in mice

(2016) Benjamin Davies et al.   NATURE

Robust and scalable inference of population history from hundreds of unphased whole genomes

(2016) Jonathan Terhorst et al.   NATURE GENETICS

New Software for the Fast Estimation of Population Recombination Rates (FastEPRR) in the Genomic Era

(2016) Feng Gao et al.   G3-Genes Genomes Genetics

Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes

(2016) Jerome Kelleher et al.   PLoS Computational Biology

The Meiotic Recombination Activator PRDM9 Trimethylates Both H3K36 and H3K4 at Recombination Hotspots In Vivo

(2016) Natalie R. Powers et al.   PLoS Genetics

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Stable recombination hotspots in birds

(2015) S. Singhal et al.   SCIENCE

Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usage

(2015) Michael Walker et al.   Epigenetics & Chromatin

Repression of the soma-specific transcriptome by Polycomb-repressive complex 2 promotes male germ cell development

(2014) Weipeng Mu et al.   GENES & DEVELOPMENT

Recombination initiation maps of individual human genomes

(2014) F. Pratto et al.   SCIENCE

Primate evolution of the recombination regulator PRDM9

(2014) Jerrod J. Schwartz et al.   Nature Communications

The Red Queen Model of Recombination Hotspots Evolution in the Light of Archaic and Modern Human Genomes

(2014) Yann Lesecque et al.   PLoS Genetics

Recombination in the Human Pseudoautosomal Region PAR1

(2014) Anjali G. Hinch et al.   PLoS Genetics

A Fast Estimate for the Population Recombination Rate Based on Regression

(2013) K. Lin et al.   GENETICS

Genetic Recombination Is Targeted towards Gene Promoter Regions in Dogs

(2013) Adam Auton et al.   PLoS Genetics

The complex binding of PRDM9

(2013) Laure Ségurel   GENOME BIOLOGY

Population Demographic History Can Cause the Appearance of Recombination Hotspots

(2012) Henry R. Johnston et al.   AMERICAN JOURNAL OF HUMAN GENETICS

ChromHMM: automating chromatin-state discovery and characterization

(2012) Jason Ernst et al.   NATURE METHODS

Genome-Wide Fine-Scale Recombination Rate Variation in Drosophila melanogaster

(2012) Andrew H. Chan et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

The landscape of recombination in African Americans

(2011) Anjali G. Hinch et al.   NATURE

Recombination rates in admixed individuals identified by ancestry-based inference

(2011) Daniel Wegmann et al.   NATURE GENETICS

Computing the Action of the Matrix Exponential, with an Application to Exponential Integrators

(2011) Awad H. Al-Mohy et al.   SIAM JOURNAL ON SCIENTIFIC COMPUTING

The Red Queen theory of recombination hotspots

(2010) F. ÚBEDA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Fine-scale recombination rate differences between sexes, populations and individuals

(2010) Augustine Kong et al.   NATURE

PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans

(2010) Ingrid L Berg et al.   NATURE GENETICS

A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage

(2010) D. M. Chou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination

(2010) S. Myers et al.   SCIENCE

PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice

(2010) F. Baudat et al.   SCIENCE

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Widespread Genomic Signatures of Natural Selection in Hominid Evolution

(2009) Graham McVicker et al.   PLoS Genetics

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics