The Evolutionary History of Drosophila simulans Y Chromosomes Reveals Molecular Signatures of Resistance to Sex Ratio Meiotic Drive

Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes

(2022) Ching-Ho Chang et al.   eLife

Analysing high-throughput sequencing data in Python with HTSeq 2.0

(2022) Givanna H Putri et al.   BIOINFORMATICS

Satellite DNA-mediated diversification of a sex-ratio meiotic drive gene family in Drosophila

(2021) Christina A. Muirhead et al.   Nature Ecology & Evolution

Rapid evolutionary dynamics of an expanding family of meiotic drive factors and their hpRNA suppressors

(2021) Jeffrey Vedanayagam et al.   Nature Ecology & Evolution

The Drosophila Y chromosome affects heterochromatin integrity genome-wide

(2020) Emily J Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dynamic Evolution of Euchromatic Satellites on the X Chromosome in Drosophila melanogaster and the simulans Clade

(2020) John S Sproul et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origins and Evolutionary Patterns of the 1.688 Satellite DNA Family in Drosophila Phylogeny

(2020) Leonardo G. de Lima et al.   G3-Genes Genomes Genetics

Sex-Ratio meiotic drive shapes the evolution of the Y chromosome in Drosophila simulans

(2019) Q Helleu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Variable Rates of Simple Satellite Gains across the Drosophila Phylogeny

(2018) Kevin H -C Wei et al.   MOLECULAR BIOLOGY AND EVOLUTION

Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome

(2018) Ching-Ho Chang et al.   GENETICS

Gene flow mediates the role of sex chromosome meiotic drive during complex speciation

(2018) Colin D Meiklejohn et al.   eLife

Comparative population genomics of latitudinal variation inDrosophila simulansandDrosophila melanogaster

(2016) Heather E. Machado et al.   MOLECULAR ECOLOGY

Rapid evolution of a Y-chromosome heterochromatin protein underlies sex chromosome meiotic drive

(2016) Quentin Helleu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hybrid Dysgenesis in Drosophila simulans Associated with a Rapid Invasion of the P-Element

(2016) Tom Hill et al.   PLoS Genetics

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Correlated variation and population differentiation in satellite DNA abundance among lines ofDrosophila melanogaster

(2014) Kevin H.-C. Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sex Chromosome Drive

(2014) Quentin Helleu et al.   Cold Spring Harbor Perspectives in Biology

An X-Linked Sex Ratio Distorter in Drosophila simulans That Kills or Incapacitates Both Noncarrier Sperm and Sons

(2014) William R. Rice   G3-Genes Genomes Genetics

Natural variation of the Y chromosome suppresses sex ratio distortion and modulates testis-specific gene expression in Drosophila simulans

(2013) A T Branco et al.   HEREDITY

Local dynamics of a fast-evolvingsex-ratiosystem inDrosophila simulans

(2013) Héloïse Bastide et al.   MOLECULAR ECOLOGY

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

Genome-Wide Gene Expression Effects of Sex Chromosome Imprinting in Drosophila

(2013) Bernardo Lemos et al.   G3-Genes Genomes Genetics

Surprising Differences in the Variability of Y Chromosomes in African and Cosmopolitan Populations of Drosophila melanogaster

(2012) A. M. Larracuente et al.   GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Rapid Rise and Fall of Selfish Sex-Ratio X Chromosomes in Drosophila simulans: Spatiotemporal Analysis of Phenotypic and Molecular Data

(2011) Héloïse Bastide et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequence Analysis of the Segmental Duplication Responsible for Paris Sex-Ratio Drive in Drosophila simulans

(2011) Lucie Fouvry et al.   G3-Genes Genomes Genetics

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Origin and evolution of Y chromosomes: Drosophila tales

(2009) A. Bernardo Carvalho et al.   TRENDS IN GENETICS