Dynamic Evolution of Euchromatic Satellites on the X Chromosome in Drosophila melanogaster and the simulans Clade

DNA double-strand break repair-pathway choice in somatic mammalian cells

(2019) Ralph Scully et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats

(2019) Tihana Vondrak et al.   PLANT JOURNAL

Meiotic drive mechanisms: lessons from Drosophila

(2019) Cécile Courret et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Chromatin That Guides Dosage Compensation Is Modulated by the siRNA Pathway inDrosophila melanogaster

(2018) Nikita Deshpande et al.   GENETICS

Double insertion of transposable elements provides a substrate for the evolution of satellite DNA

(2018) Michael P. McGurk et al.   GENOME RESEARCH

Variable Rates of Simple Satellite Gains across the Drosophila Phylogeny

(2018) Kevin H -C Wei et al.   MOLECULAR BIOLOGY AND EVOLUTION

Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development

(2018) Yuki Ogiyama et al.   MOLECULAR CELL

Discoveries of Extrachromosomal Circles of DNA in Normal and Tumor Cells

(2018) Teressa Paulsen et al.   TRENDS IN GENETICS

Chromatin That Guides Dosage Compensation Is Modulated by the siRNA Pathway inDrosophila melanogaster

(2018) Nikita Deshpande et al.   GENETICS

FlyBase 2.0: the next generation

(2018) Jim Thurmond et al.   NUCLEIC ACIDS RESEARCH

The X-linked 1.688 Satellite inDrosophila melanogasterPromotes Specific Targeting by Painting of Fourth

(2017) Maria Kim et al.   GENETICS

Sequencing historical specimens: successful preparation of small specimens with low amounts of degraded DNA

(2017) John S. Sproul et al.   Molecular Ecology Resources

Non-homologous DNA end joining and alternative pathways to double-strand break repair

(2017) Howard H. Y. Chang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens

(2017) Massa J. Shoura et al.   G3-Genes Genomes Genetics

Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants

(2017) Sophie Lanciano et al.   PLoS Genetics

Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution

(2017) Yuh Chwen G Lee et al.   eLife

The X-linked 1.688 Satellite inDrosophila melanogasterPromotes Specific Targeting by Painting of Fourth

(2017) Maria Kim et al.   GENETICS

Genomic variation within alpha satellite DNA influences centromere location on human chromosomes with metastable epialleles

(2016) Megan E. Aldrup-MacDonald et al.   GENOME RESEARCH

The Ecology and Evolutionary Dynamics of Meiotic Drive

(2016) Anna K. Lindholm et al.   TRENDS IN ECOLOGY & EVOLUTION

High-throughput analysis of the satellitome illuminates satellite DNA evolution

(2016) Francisco J. Ruiz-Ruano et al.   Scientific Reports

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Extrachromosomal circular DNA is common in yeast

(2015) Henrik D. Møller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dosage Compensation inDrosophila

(2015) John C. Lucchesi et al.   Cold Spring Harbor Perspectives in Biology

Satellite DNA Modulates Gene Expression in the Beetle Tribolium castaneum after Heat Stress

(2015) Isidoro Feliciello et al.   PLoS Genetics

The organization and evolution of the Responder satellite in species of the Drosophila melanogaster group: dynamic evolution of a target of meiotic drive

(2014) Amanda M Larracuente   BMC EVOLUTIONARY BIOLOGY

Satellite DNA as a Driver of Population Divergence in the Red Flour Beetle Tribolium castaneum

(2014) Isidoro Feliciello et al.   Genome Biology and Evolution

Tetris Is a Foldback Transposon that Provided the Building Blocks for an Emerging Satellite DNA of Drosophila virilis

(2014) Guilherme B. Dias et al.   Genome Biology and Evolution

Recurrent Turnover of Chromosome-Specific Satellites in Drosophila

(2014) Miguel Gallach   Genome Biology and Evolution

Frequent Interchromosomal Template Switches during Gene Conversion in S. cerevisiae

(2014) Olga Tsaponina et al.   MOLECULAR CELL

siRNAs from an X-linked satellite repeat promote X-chromosome recognition inDrosophila melanogaster

(2014) Debashish U. Menon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeting of Painting of fourth to roX1 and roX2 Proximal Sites Suggests Evolutionary Links Between Dosage Compensation and the Regulation of the fourth Chromosome in Drosophila melanogaster

(2013) Lina E. Lundberg et al.   G3-Genes Genomes Genetics

Genome sequencing reveals complex speciation in the Drosophila simulans clade

(2012) D. Garrigan et al.   GENOME RESEARCH

Extrachromosomal MicroDNAs and Chromosomal Microdeletions in Normal Tissues

(2012) Y. Shibata et al.   SCIENCE

Satellite DNA-Like Elements Associated With Genes Within Euchromatin of the Beetle Tribolium castaneum

(2012) Josip Brajković et al.   G3-Genes Genomes Genetics

The 1.688 Repetitive DNA of Drosophila: Concerted Evolution at Different Genomic Scales and Association with Genes

(2011) Gustavo C. S. Kuhn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences

(2010) Rita Gemayel et al.   Annual Review of Genetics

Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus

(2010) D. Gresham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extrachromosomal Circular DNA in Eukaryotes: Possible Involvement in the Plasticity of Tandem Repeats

(2009) S. Cohen et al.   CYTOGENETIC AND GENOME RESEARCH

Species-Wide Genetic Variation and Demographic History of Drosophila sechellia , a Species Lacking Population Structure

(2009) Delphine Legrand et al.   GENETICS

Species-Specific Heterochromatin Prevents Mitotic Chromosome Segregation to Cause Hybrid Lethality in Drosophila

(2009) Patrick M. Ferree et al.   PLOS BIOLOGY

A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation

(2009) P. J. Hastings et al.   PLoS Genetics

Survey of extrachromosomal circular DNA derived from plant satellite repeats

(2008) Alice Navrátilová et al.   BMC PLANT BIOLOGY

Centromere-Associated Female Meiotic Drive Entails Male Fitness Costs in Monkeyflowers

(2008) L. Fishman et al.   SCIENCE

MMEJ repair of double-strand breaks (director’s cut): deleted sequences and alternative endings

(2008) Mitch McVey et al.   TRENDS IN GENETICS