Weighted hypergraph learning and adaptive inductive matrix completion for SARS-CoV-2 drug repositioning

DeepMNE: Deep Multi-network Embedding for lncRNA-Disease Association prediction

(2022) Yingjun Ma   IEEE Journal of Biomedical and Health Informatics

Generalized matrix factorization based on weighted hypergraph learning for microbe-drug association prediction

(2022) Yingjun Ma et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Computational drug repositioning using similarity constrained weight regularization matrix factorization: A case of COVID ‐19

(2022) Junlin Xu et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Drug repositioning based on similarity constrained probabilistic matrix factorization: COVID-19 as a case study

(2021) Yajie Meng et al.   APPLIED SOFT COMPUTING

Mechanism of SARS-CoV-2 polymerase stalling by remdesivir

(2021) Goran Kokic et al.   Nature Communications

Prioritizing antiviral drugs against SARS-CoV-2 by integrating viral complete genome sequences and drug chemical structures

(2021) Lihong Peng et al.   Scientific Reports

Hypergraph-based Logistic Matrix Factorization for Metabolite-disease Interaction Prediction

(2021) Yingjun Ma et al.   BIOINFORMATICS

Discovery and development of safe-in-man broad-spectrum antiviral agents

(2020) Petter I. Andersen et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

A graph regularized generalized matrix factorization model for predicting links in biomedical bipartite networks

(2020) Zi-Chao Zhang et al.   BIOINFORMATICS

Multi‐network logistic matrix factorization for metabolite–disease interaction prediction

(2020) Yingjun Ma et al.   FEBS LETTERS

A Review of Coronavirus Disease-2019 (COVID-19)

(2020) Tanu Singhal   INDIAN JOURNAL OF PEDIATRICS

Deep Learning Based Drug Screening for Novel Coronavirus 2019-nCov

(2020) Haiping Zhang et al.   Interdisciplinary Sciences-Computational Life Sciences

Gemcitabine, lycorine and oxysophoridine inhibit novel coronavirus (SARS-CoV-2) in cell culture

(2020) Ya-Nan Zhang et al.   Emerging Microbes & Infections

Network-based drug repurposing for novel coronavirus 2019-nCoV/SARS-CoV-2

(2020) Yadi Zhou et al.   Cell Discovery

Predicting Human Microbe-Drug Associations via Graph Convolutional Network with Conditional Random Field

(2020) Yahui Long et al.   BIOINFORMATICS

A comprehensive integrated drug similarity resource for in-silico drug repositioning and beyond

(2020) A K M Azad et al.   BRIEFINGS IN BIOINFORMATICS

Ribavirin, Remdesivir, Sofosbuvir, Galidesivir, and Tenofovir against SARS-CoV-2 RNA dependent RNA polymerase (RdRp): A molecular docking study

(2020) Abdo A. Elfiky   LIFE SCIENCES

Characteristics of SARS-CoV-2 and COVID-19

(2020) Ben Hu et al.   NATURE REVIEWS MICROBIOLOGY

Both Boceprevir and GC376 efficaciously inhibit SARS-CoV-2 by targeting its main protease

(2020) Lifeng Fu et al.   Nature Communications

Identifying Effective Antiviral Drugs Against SARS-CoV-2 by Drug Repositioning Through Virus-Drug Association Prediction

(2020) Lihong Peng et al.   Frontiers in Genetics

GraphLSHC: Towards large scale spectral hypergraph clustering

(2020) Yiyang Yang et al.   INFORMATION SCIENCES

Improved SVD-based initialization for nonnegative matrix factorization using low-rank correction

(2019) Syed Muhammad Atif et al.   PATTERN RECOGNITION LETTERS

Projection-Based Neighborhood Non-Negative Matrix Factorization for lncRNA-Protein Interaction Prediction

(2019) Yingjun Ma et al.   Frontiers in Genetics

Prediction of lncRNA–disease associations based on inductive matrix completion

(2018) Chengqian Lu et al.   BIOINFORMATICS

Predicting miRNA–disease association based on inductive matrix completion

(2018) Xing Chen et al.   BIOINFORMATICS

Identification of drug-side effect association via multiple information integration with centered kernel alignment

(2018) Yijie Ding et al.   NEUROCOMPUTING

SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions

(2018) Wen Zhang et al.   PLoS Computational Biology

Drug-Target Interaction Prediction with Graph Regularized Matrix Factorization

(2017) Ali Ezzat et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

On the effect of hyperedge weights on hypergraph learning

(2017) Sheng Huang et al.   IMAGE AND VISION COMPUTING

Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences

(2016) Nathan A. Ahlgren et al.   NUCLEIC ACIDS RESEARCH

Animal models for SARS and MERS coronaviruses

(2015) Lisa M Gretebeck et al.   Current Opinion in Virology

DrugBank 4.0: shedding new light on drug metabolism

(2013) Vivian Law et al.   NUCLEIC ACIDS RESEARCH

ChemmineR: a compound mining framework for R

(2008) Y. Cao et al.   BIOINFORMATICS