Projection-Based Neighborhood Non-Negative Matrix Factorization for lncRNA-Protein Interaction Prediction
Published 2019 View Full Article
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Title
Projection-Based Neighborhood Non-Negative Matrix Factorization for lncRNA-Protein Interaction Prediction
Authors
Keywords
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Journal
Frontiers in Genetics
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2019-11-20
DOI
10.3389/fgene.2019.01148
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Note: Only part of the references are listed.- The linear neighborhood propagation method for predicting long non-coding RNA–protein interactions
- (2018) Wen Zhang et al. NEUROCOMPUTING
- HLPI-Ensemble: Prediction of human lncRNA-protein interactions based on ensemble strategy
- (2018) Huan Hu et al. RNA Biology
- Functional classification of long non-coding RNAs by k-mer content
- (2018) Jessime M. Kirk et al. NATURE GENETICS
- Accurate prediction of protein-lncRNA interactions by diffusion and HeteSim features across heterogeneous network
- (2018) Lei Deng et al. BMC BIOINFORMATICS
- SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions
- (2018) Wen Zhang et al. PLoS Computational Biology
- NONCODEV5: a comprehensive annotation database for long non-coding RNAs
- (2017) ShuangSang Fang et al. NUCLEIC ACIDS RESEARCH
- Prediction of lncRNA-protein interactions using HeteSim scores based on heterogeneous networks
- (2017) Yun Xiao et al. Scientific Reports
- Computational prediction of virus–human protein–protein interactions using embedding kernelized heterogeneous data
- (2016) Esmaeil Nourani et al. Molecular BioSystems
- Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
- (2016) Nathan A. Ahlgren et al. NUCLEIC ACIDS RESEARCH
- Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction
- (2016) Yong Liu et al. PLoS Computational Biology
- Roles, Functions, and Mechanisms of Long Non-coding RNAs in Cancer
- (2016) Yiwen Fang et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- A Bipartite Network-based Method for Prediction of Long Non-coding RNA–protein Interactions
- (2016) Mengqu Ge et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Exploiting ontology graph for predicting sparsely annotated gene function
- (2015) Sheng Wang et al. BIOINFORMATICS
- protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences
- (2015) Nan Xiao et al. BIOINFORMATICS
- RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information
- (2015) V. Suresh et al. NUCLEIC ACIDS RESEARCH
- Predicting Long Noncoding RNA and Protein Interactions Using Heterogeneous Network Model
- (2015) Ao Li et al. Biomed Research International
- PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition
- (2014) Wei Chen et al. ANALYTICAL BIOCHEMISTRY
- repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects
- (2014) Bin Liu et al. BIOINFORMATICS
- iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition
- (2014) Shou-Hui Guo et al. BIOINFORMATICS
- Computational prediction of associations between long non-coding RNAs and proteins
- (2013) Qiongshi Lu et al. BMC GENOMICS
- New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
- (2013) K. Song et al. BRIEFINGS IN BIOINFORMATICS
- Long Noncoding RNAs: Cellular Address Codes in Development and Disease
- (2013) Pedro J. Batista et al. CELL
- NPInter v2.0: an updated database of ncRNA interactions
- (2013) Jiao Yuan et al. NUCLEIC ACIDS RESEARCH
- NONCODEv4: exploring the world of long non-coding RNA genes
- (2013) Chaoyong Xie et al. NUCLEIC ACIDS RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- LNCipedia: a database for annotated human lncRNA transcript sequences and structures
- (2012) Pieter-Jan Volders et al. NUCLEIC ACIDS RESEARCH
- STRING v9.1: protein-protein interaction networks, with increased coverage and integration
- (2012) Andrea Franceschini et al. NUCLEIC ACIDS RESEARCH
- Predicting protein associations with long noncoding RNAs
- (2011) Matteo Bellucci et al. NATURE METHODS
- RNA–protein interactions in human health and disease
- (2011) Ahmad M. Khalil et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Long noncoding RNAs and human disease
- (2011) Orly Wapinski et al. TRENDS IN CELL BIOLOGY
- GOSemSim: an R package for measuring semantic similarity among GO terms and gene products
- (2010) G. Yu et al. BIOINFORMATICS
- Long Noncoding RNAs with Enhancer-like Function in Human Cells
- (2010) Ulf Andersson Ørom et al. CELL
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