Becoming pure: identifying generational classes of admixed individuals within lesser and greater scaup populations

A framework to guide the conservation of species hybrids based on ethical and ecological considerations

(2015) Raeya N. Jackiw et al.   CONSERVATION BIOLOGY

The Avian Hybrids Project: gathering the scientific literature on avian hybridization

(2015) Jente Ottenburghs et al.   IBIS

Genetic admixture supports an ancient hybrid origin of the endangered Hawaiian duck

(2015) P. Lavretsky et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Positive Selection Underlies Faster-Z Evolution of Gene Expression in Birds

(2015) Rebecca Dean et al.   MOLECULAR BIOLOGY AND EVOLUTION

Speciation genomics and a role for the Z chromosome in the early stages of divergence between Mexican ducks and mallards

(2015) Philip Lavretsky et al.   MOLECULAR ECOLOGY

Variation in promiscuity and sexual selection drives avian rate of Faster-Z evolution

(2015) Alison E. Wright et al.   MOLECULAR ECOLOGY

Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals

(2015) David J. Combosch et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species taxonomy of birds: Which null hypothesis?

(2014) Frank B. Gill   AUK

Temporal genomic evolution of bird sex chromosomes

(2014) Zongji Wang et al.   BMC EVOLUTIONARY BIOLOGY

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bears in a Forest of Gene Trees: Phylogenetic Inference Is Complicated by Incomplete Lineage Sorting and Gene Flow

(2014) Verena E. Kutschera et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mito-nuclear discord in six congeneric lineages of Holarctic ducks (genusAnas)

(2014) Jeffrey L. Peters et al.   MOLECULAR ECOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Genomics and the origin of species

(2014) Ole Seehausen et al.   NATURE REVIEWS GENETICS

Distinguishing between Incomplete Lineage Sorting and Genomic Introgressions: Complete Fixation of Allospecific Mitochondrial DNA in a Sexually Reproducing Fish (Cobitis; Teleostei), despite Clonal Reproduction of Hybrids

(2014) Lukas Choleva et al.   PLoS One

Amplification Biases and Consistent Recovery of Loci in a Double-Digest RAD-seq Protocol

(2014) Jeffrey M. DaCosta et al.   PLoS One

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

The application of species criteria in avian taxonomy and its implications for the debate over species concepts

(2013) George Sangster   BIOLOGICAL REVIEWS

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

Development of SNP markers identifying European wildcats, domestic cats, and their admixed progeny

(2013) B. Nussberger et al.   Molecular Ecology Resources

Phylogenetics of a recent radiation in the mallards and allies (Aves: Anas): Inferences from a genomic transect and the multispecies coalescent

(2013) Philip Lavretsky et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Widespread horizontal genomic exchange does not erode species barriers among sympatric ducks

(2012) Robert HS Kraus et al.   BMC EVOLUTIONARY BIOLOGY

The effect of RAD allele dropout on the estimation of genetic variation within and between populations

(2012) Mathieu Gautier et al.   MOLECULAR ECOLOGY

Genome-wide single nucleotide polymorphism analysis reveals recent genetic introgression from domestic pigs into Northwest European wild boar populations

(2012) D. J. GOEDBLOED et al.   MOLECULAR ECOLOGY

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Genetic Introgression: An Integral but neglected component of speciation in birds

(2011) Frank E. Rheindt et al.   AUK

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Random interbreeding between cryptic lineages of the Common Raven: evidence for speciation in reverse

(2011) WILLIAM C. WEBB et al.   MOLECULAR ECOLOGY

Repeated Adaptive Introgression at a Gene under Multiallelic Balancing Selection

(2011) Vincent Castric et al.   PLoS Genetics

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Rampant historical mitochondrial genome introgression between two species of green pond frogs, Pelophylax nigromaculatus and P. plancyi

(2010) Kui Liu et al.   BMC EVOLUTIONARY BIOLOGY

Adaptive introgression of abiotic tolerance traits in the sunflower Helianthus annuus

(2010) Kenneth D. Whitney et al.   NEW PHYTOLOGIST

Sexual imprinting misguides species recognition in a facultative interspecific brood parasite

(2010) M. D. Sorenson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary stasis: the stable chromosomes of birds

(2010) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species

(2009) M A F Noor et al.   HEREDITY

Faster-Z Evolution Is Predominantly Due to Genetic Drift

(2009) J. E. Mank et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence for Ecological Speciation and Its Alternative

(2009) D. Schluter   SCIENCE

A quasi-Newton acceleration for high-dimensional optimization algorithms

(2009) Hua Zhou et al.   STATISTICS AND COMPUTING

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

MULTILOCUS PHYLOGEOGRAPHY OF A HOLARCTIC DUCK: COLONIZATION OF NORTH AMERICA FROM EURASIA BY GADWALL (ANAS STREPERA)

(2008) Jeffrey L. Peters et al.   EVOLUTION

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY