Speciation genomics and a role for the Z chromosome in the early stages of divergence between Mexican ducks and mallards

Recent speciation and elevated Z-chromosome differentiation between sexually monochromatic and dichromatic species of Australian teals

(2015) Kirandeep K. Dhami et al.   JOURNAL OF AVIAN BIOLOGY

Genetic admixture supports an ancient hybrid origin of the endangered Hawaiian duck

(2015) P. Lavretsky et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Positive Selection Underlies Faster-Z Evolution of Gene Expression in Birds

(2015) Rebecca Dean et al.   MOLECULAR BIOLOGY AND EVOLUTION

Variation in promiscuity and sexual selection drives avian rate of Faster-Z evolution

(2015) Alison E. Wright et al.   MOLECULAR ECOLOGY

Similarity thresholds used in DNA sequence assembly from short reads can reduce the comparability of population histories across species

(2015) Michael G. Harvey et al.   PeerJ

Rapid radiation and hybridization contribute to weak differentiation and hinder phylogenetic inferences in the New World Mallard complex (Anasspp.)

(2014) Philip Lavretsky et al.   AUK

Species taxonomy of birds: Which null hypothesis?

(2014) Frank B. Gill   AUK

Temporal genomic evolution of bird sex chromosomes

(2014) Zongji Wang et al.   BMC EVOLUTIONARY BIOLOGY

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

A role for migration-linked genes and genomic islands in divergence of a songbird

(2014) Kristen Ruegg et al.   MOLECULAR ECOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Genomics and the origin of species

(2014) Ole Seehausen et al.   NATURE REVIEWS GENETICS

Amplification Biases and Consistent Recovery of Loci in a Double-Digest RAD-seq Protocol

(2014) Jeffrey M. DaCosta et al.   PLoS One

The application of species criteria in avian taxonomy and its implications for the debate over species concepts

(2013) George Sangster   BIOLOGICAL REVIEWS

Interspecific hybridization contributes to high genetic diversity and apparent effective population size in an endemic population of mottled ducks (Anas fulvigula maculosa)

(2013) Jeffrey L. Peters et al.   CONSERVATION GENETICS

DIVERGENCE IS FOCUSED ON FEW GENOMIC REGIONS EARLY IN SPECIATION: INCIPIENT SPECIATION OF SUNFLOWER ECOTYPES

(2013) Rose L. Andrew et al.   EVOLUTION

GENOME EVOLUTION AND SPECIATION: TOWARD QUANTITATIVE DESCRIPTIONS OF PATTERN AND PROCESS

(2013) Patrik Nosil et al.   EVOLUTION

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

Sex-specific clines support incipient speciation in a common European mammal

(2013) A Sutter et al.   HEREDITY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Phylogenetics of a recent radiation in the mallards and allies (Aves: Anas): Inferences from a genomic transect and the multispecies coalescent

(2013) Philip Lavretsky et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The duck genome and transcriptome provide insight into an avian influenza virus reservoir species

(2013) Yinhua Huang et al.   NATURE GENETICS

THE LANGUAGE OF SPECIATION

(2012) Richard G. Harrison   EVOLUTION

Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species

(2012) Kai N. Stölting et al.   MOLECULAR ECOLOGY

Heterogeneity in Genetic Diversity among Non-Coding Loci Fails to Fit Neutral Coalescent Models of Population History

(2012) Jeffrey L. Peters et al.   PLoS One

Genomic consequences of multiple speciation processes in a stick insect

(2012) P. Nosil et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The genomics of speciation-with-gene-flow

(2012) Jeffrey L. Feder et al.   TRENDS IN GENETICS

Fifty-Second Supplement to the American Ornithologists' Unioncheck-list of North American Birds

(2011) R. Terry Chesser et al.   AUK

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)

(2011) Robert HS Kraus et al.   BMC GENOMICS

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Rapid phenotypic evolution during incipient speciation in a continental avian radiation

(2011) L. Campagna et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The genes underlying the process of speciation

(2011) Patrik Nosil et al.   TRENDS IN ECOLOGY & EVOLUTION

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Comparing three different methods to detect selective loci using dominant markers

(2010) A. PÉREZ-FIGUEROA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Speciation genetics: current status and evolving approaches

(2010) J. B. W. Wolf et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Reuniting Phenotype and Genotype in Biodiversity Research

(2009) Kevin Winker   BIOSCIENCE

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Faster-Z Evolution Is Predominantly Due to Genetic Drift

(2009) J. E. Mank et al.   MOLECULAR BIOLOGY AND EVOLUTION

Speciation inPasserinabuntings: introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation

(2009) MATTHEW D. CARLING et al.   MOLECULAR ECOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Evidence for Ecological Speciation and Its Alternative

(2009) D. Schluter   SCIENCE

A quasi-Newton acceleration for high-dimensional optimization algorithms

(2009) Hua Zhou et al.   STATISTICS AND COMPUTING

Ecological explanations for (incomplete) speciation

(2009) Patrik Nosil et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptive radiation, nonadaptive radiation, ecological speciation and nonecological speciation

(2009) Rebecca J. Rundell et al.   TRENDS IN ECOLOGY & EVOLUTION

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

The different levels of genetic diversity in sex chromosomes and autosomes

(2009) Hans Ellegren   TRENDS IN GENETICS

POSTZYGOTIC GENETIC INCOMPATIBILITY BETWEEN SYMPATRIC COLOR MORPHS

(2008) Sarah R. Pryke et al.   EVOLUTION

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Sequencing goes 454 and takes large-scale genomics into the wild

(2008) HANS ELLEGREN   MOLECULAR ECOLOGY

Interpreting principal component analyses of spatial population genetic variation

(2008) John Novembre et al.   NATURE GENETICS

A Single Gene Causes Both Male Sterility and Segregation Distortion in Drosophila Hybrids

(2008) N. Phadnis et al.   SCIENCE