Variation in promiscuity and sexual selection drives avian rate of Faster-Z evolution

Temporal genomic evolution of bird sex chromosomes

(2014) Zongji Wang et al.   BMC EVOLUTIONARY BIOLOGY

Whole genome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution

(2014) Biao Wang et al.   BMC GENOMICS

The role of sex chromosomes in sexual dimorphism: discordance between molecular and phenotypic data

(2014) R. Dean et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The Ontogeny and Evolution of Sex-Biased Gene Expression in Drosophila melanogaster

(2014) Jennifer C. Perry et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Evolutionary Genomics of Birds

(2013) Hans Ellegren   Annual Review of Ecology Evolution and Systematics

Transcriptome Sequencing Reveals the Character of Incomplete Dosage Compensation across Multiple Tissues in Flycatchers

(2013) Severin Uebbing et al.   Genome Biology and Evolution

The scope and strength of sex-specific selection in genome evolution

(2013) A. E. Wright et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The evolutionary causes and consequences of sex-biased gene expression

(2013) John Parsch et al.   NATURE REVIEWS GENETICS

Development of Strategies for SNP Detection in RNA-Seq Data: Application to Lymphoblastoid Cell Lines and Evaluation Using 1000 Genomes Data

(2013) Emma M. Quinn et al.   PLoS One

Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution

(2013) B. Vicoso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The faster-X effect: integrating theory and data

(2013) Richard P. Meisel et al.   TRENDS IN GENETICS

Comparative Sex Chromosome Genomics in Snakes: Differentiation, Evolutionary Strata, and Lack of Global Dosage Compensation

(2013) Beatriz Vicoso et al.   PLOS BIOLOGY

Masculinization of Gene Expression Is Associated with Exaggeration of Male Sexual Dimorphism

(2013) Marie A. Pointer et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

THE GENOMIC SIGNATURE OF SEXUAL SELECTION IN THE GENETIC DIVERSITY OF THE SEX CHROMOSOMES AND AUTOSOMES

(2012) Ammon Corl et al.   EVOLUTION

Genomic Variation in Natural Populations of Drosophila melanogaster

(2012) C. H. Langley et al.   GENETICS

Rate of Amino Acid Substitution Is Influenced by the Degree and Conservation of Male-Biased Transcription Over 50 Myr of Drosophila Evolution

(2012) Sonja Grath et al.   Genome Biology and Evolution

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Impact of Genetic Architecture on the Relative Rates of X versus Autosomal Adaptive Substitution

(2012) T. Connallon et al.   MOLECULAR BIOLOGY AND EVOLUTION

QTL and quantitative genetic analysis of beak morphology reveals patterns of standing genetic variation in an Estrildid finch

(2012) ULRICH KNIEF et al.   MOLECULAR ECOLOGY

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Extensive X-linked adaptive evolution in central chimpanzees

(2012) C. Hvilsom et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

QTL LINKAGE MAPPING OF ZEBRA FINCH BEAK COLOR SHOWS AN OLIGOGENIC CONTROL OF A SEXUALLY SELECTED TRAIT

(2011) Holger Schielzeth et al.   EVOLUTION

LINEAGE-SPECIFIC VARIATION IN SLOW- AND FAST-X EVOLUTION IN PRIMATES

(2011) Ke Xu et al.   EVOLUTION

No Excess Gene Movement Is Detected off the Avian or Lepidopteran Z Chromosome

(2011) Melissa A. Toups et al.   Genome Biology and Evolution

Towards a More Nuanced Understanding of the Relationship between Sex-Biased Gene Expression and Rates of Protein-Coding Sequence Evolution

(2011) R. P. Meisel   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Sex bias and dosage compensation in the zebra finch versus chicken genomes: General and specialized patterns among birds

(2010) Y. Itoh et al.   GENOME RESEARCH

Adaptive Evolution of Four Microcephaly Genes and the Evolution of Brain Size in Anthropoid Primates

(2010) S. H. Montgomery et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ontogenetic Complexity of Sexual Dimorphism and Sex-Specific Selection

(2010) J. E. Mank et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis

(2010) Rami A. Dalloul et al.   PLOS BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis

(2009) Benjamin M Skinner et al.   BMC GENOMICS

EFFECTIVE POPULATION SIZE AND THE FASTER-X EFFECT: AN EXTENDED MODEL

(2009) Beatriz Vicoso et al.   EVOLUTION

EFFECTIVE POPULATION SIZE AND THE FASTER-X EFFECT: EMPIRICAL RESULTS AND THEIR INTERPRETATION

(2009) Judith E. Mank et al.   EVOLUTION

Faster-Z Evolution Is Predominantly Due to Genetic Drift

(2009) J. E. Mank et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

The W, X, Y and Z of sex-chromosome dosage compensation

(2009) Judith E. Mank   TRENDS IN GENETICS

Controlling Type-I Error of the McDonald–Kreitman Test in Genomewide Scans for Selection on Noncoding DNA

(2008) Peter Andolfatto   GENETICS

All dosage compensation is local: Gene-by-gene regulation of sex-biased expression on the chicken Z chromosome

(2008) J E Mank et al.   HEREDITY

Effects of X-Linkage and Sex-Biased Gene Expression on the Rate of Adaptive Protein Evolution in Drosophila

(2008) J. F. Baines et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural selection in avian protein-coding genes expressed in brain

(2008) ERIK AXELSSON et al.   MOLECULAR ECOLOGY

Contrasting the Efficacy of Selection on the X and Autosomes in Drosophila

(2007) N. D. Singh et al.   MOLECULAR BIOLOGY AND EVOLUTION